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shpak.max
shpak.max
Reputation:
80
Joined:
11.8 years ago
Last seen:
1 month ago
Location:
United States
Latest posts by user
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Comment: Comment: VCF sample id format for snpgdsVCF2GDS (SNPRelate package)
written by shpak.max • shpak.max
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Comment: Comment: VCF sample id format for snpgdsVCF2GDS (SNPRelate package)
written by shpak.max • shpak.max
0 votes
4 replies
223 views
VCF sample id format for snpgdsVCF2GDS (SNPRelate package)
gds snprelate vcf
updated by Arup Ghosh Arup Ghosh • written by shpak.max • shpak.max
1 vote
1 reply
0 views
Comment: Comment: Problems with biomaRt installation due to dplyr function "filter_out"
written by shpak.max • shpak.max
0 votes
3 replies
308 views
Problems with biomaRt installation due to dplyr function "filter_out"
biomart dplyr bioconductor
updated by Arup Ghosh Arup Ghosh • written by shpak.max • shpak.max
1 vote
0 replies
0 views
Comment: Comment: snpEff: Unsupported structural variant types
written by shpak.max • shpak.max
0 votes
2 replies
1.3K views
snpEff: Unsupported structural variant types
vcf snpeff
written by shpak.max • shpak.max
0 votes
1 reply
600 views
Running snpEff with hg19 reference genome (config file question)
snpeff hg19
updated by Pierre Lindenbaum Pierre Lindenbaum • written by shpak.max • shpak.max
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1 reply
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Comment: Comment: SNP annotation tool options (alternatives to ANNOVAR)
updated by GenoMax GenoMax • written by shpak.max • shpak.max
0 votes
1 reply
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Comment: Comment: SNP annotation tool options (alternatives to ANNOVAR)
written by shpak.max • shpak.max
0 votes
6 replies
1.7K views
SNP annotation tool options (alternatives to ANNOVAR)
annotation annovar
updated by Nicole • Nicole • written by shpak.max • shpak.max
0 votes
0 replies
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Comment: Comment: Alternatives to UCSC genome browser for obtaining gene coordinates
written by shpak.max • shpak.max
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0 replies
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Comment: Comment: Alternatives to UCSC genome browser for obtaining gene coordinates
written by shpak.max • shpak.max
1 vote
5 replies
1.9K views
Alternatives to UCSC genome browser for obtaining gene coordinates
browser ucsc
written by shpak.max • shpak.max
0 votes
1 reply
0 views
Comment: Comment: Identify and count gaps in sam/bam files
written by shpak.max • shpak.max
0 votes
4 replies
1.4K views
Identify and count gaps in sam/bam files
samtools
updated by Mark Mark • written by shpak.max • shpak.max
0 votes
0 replies
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Comment: Comment: Correcting a lack of gaps in bwa aln mapping of unpaired reads
written by shpak.max • shpak.max
0 votes
2 replies
972 views
Correcting a lack of gaps in bwa aln mapping of unpaired reads
bwa
written by shpak.max • shpak.max
0 votes
1 reply
0 views
Comment: Comment: Mismatch between number of reads in fastq and mapped reads
written by shpak.max • shpak.max
0 votes
3 replies
1.0K views
Mismatch between number of reads in fastq and mapped reads
samtools bam
updated by samuel.a.odonnell samuel.a.odonnell • written by shpak.max • shpak.max
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