Problems with biomaRt installation due to dplyr function "filter_out"
I'm running R 4.5.3, and when I attempted to install biomaRt using
BiocManager::install("biomaRt")
It seems to install after a large number of generic warnings. However, when I attempt to load biomaRt for use, I get the error message:
Error: package or namespace load failed for ‘biomaRt’:
object ‘filter_out’ is not exported by 'namespace:dplyr'
I thought that I could fix this by re-installing dplyr in order to update to the current version, but the problem persists after I do so. What else could I try to get this to work?
Incidentally, the installed dbplyr that I have is 1.1.4, which should be compatible with biomaRt according to documentation.
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Arup Ghosh
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shpak.max •
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Start a new project with
renvand try the install command.Could you please clarify what is going wrong in the standard work environment, i.e. why reinstalling dplyr to a seemingly compatible version doesn't resolve the issue?
The installed version of
dplyrmay be incompatible withbiomaRtor may not provide the required functions. Try updatingbiomaRtand restarting your R session.