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mgranada3
mgranada3
Reputation:
60 (New)
Joined:
4.7 years ago
Last seen:
1.8 years ago
Location:
United States

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Latest posts by user
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Comment: Comment: How do I find allele frequencies from GATK output?
written by mgranada3 6
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1 reply
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Comment: Comment: How do I find allele frequencies from GATK output?
written by mgranada3 6
1 vote
1 reply
1.1K views
Why does the AD value of my VCF file display 3 values?
gatk vcf snpeff
updated by Jeremy Leipzig 2.3K • | written by mgranada3 6
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Comment: Comment: Where do I gather indel and frameshift information in SnpEff output?
written by mgranada3 6
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2 replies
1.1K views
Where do I gather indel and frameshift information in SnpEff output?
frameshift wgwps snpeff gatk indels
written by mgranada3 6
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1 reply
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Comment: Comment: What's next after GATK variant calling pipeline?
written by mgranada3 6
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2 replies
1.2K views
Why does 1 variant produce 3 genes as a result?
gatk snpeff
updated by Kevin Blighe 9.0K • | written by mgranada3 6
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1 reply
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Comment: Comment: How do I find allele frequencies from GATK output?
written by mgranada3 6
0 votes
0 replies
0 views
Comment: Comment: How do I find allele frequencies from GATK output?
written by mgranada3 6
0 votes
9 replies
2.8K views
How do I find allele frequencies from GATK output?
allele-frequency gatk muller-plot
updated by 2nelly 35 • | written by mgranada3 6
0 votes
3 replies
1.6K views
What's next after GATK variant calling pipeline?
gatk pipeline figures dna-seq
updated by Michael Dondrup 5.6K • | written by mgranada3 6
0 votes
1 reply
756 views
GATK won't produce figures while analyzing covariates to generate 'recal_plots.pdf'
gatk recalibration
updated by GenoMax 16K • | written by mgranada3 6
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0 replies
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Comment: Comment: Sorted bam files have zero content
written by mgranada3 6
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0 replies
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Comment: Comment: Sorted bam files have zero content
written by mgranada3 6
0 votes
4 replies
2.0K views
Sorted bam files have zero content
bam picard dna-seq sorted
updated by Michael Dondrup 5.6K • | written by mgranada3 6
0 votes
1 reply
0 views
Comment: Comment: Does samtools output a new .bam file after I add a read group to it?
written by mgranada3 6
0 votes
3 replies
1.1K views
Does samtools output a new .bam file after I add a read group to it?
samtools readgroup gatk
updated by Pierre Lindenbaum 17K • | written by mgranada3 6
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0 replies
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Comment: Comment: Bwa-mem2 indexing not working down stream
written by mgranada3 6
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2 replies
1.8K views
Bwa-mem2 indexing not working down stream
bwa-mem2 index fasta
written by mgranada3 6
0 votes
1 reply
1.0K views
Sorted bam files are empty after sorting them from bam
bam dna
updated by Ram 4.5K • | written by mgranada3 6
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