This is a test version of Biostars. For the public version, visit https://www.biostars.org.
ashkan
ashkan
Reputation:
160 (Trusted)
Joined:
11.3 years ago
Last seen:
2.0 years ago
Location:
Netherlands
Latest posts by user
0 votes
1 reply
0 views
Comment: Comment: Detection of unknown sub cells in a population of cells using DEGs from scRNAseq
written by ashkan 16
0 votes
3 replies
1.1K views
Detection of unknown sub cells in a population of cells using DEGs from scRNAseq data
scrnaseq
updated by ATpoint 9.1K • | written by ashkan 16
0 votes
1 reply
914 views
Sorting DEGs in the dotplot for every column
scrnaseq
updated by Bastien HervĂ© 680 • | written by ashkan 16
0 votes
1 reply
646 views
No output when converting transcript IDs to gene symbols
rna-seq
updated by Ram 4.5K • | written by ashkan 16
0 votes
2 replies
1.1K views
converting transcript IDs (Ensembl) to gene symbols in R
rna-seq
updated by GenoMax 16K • | written by ashkan 16
0 votes
0 replies
0 views
Comment: Comment: zero TPM for many gene including housekeeping when using kallisto
written by ashkan 16
0 votes
0 replies
0 views
Comment: Comment: zero TPM for many gene including housekeeping when using kallisto
written by ashkan 16
0 votes
1 reply
0 views
Comment: Comment: zero TPM for many gene including housekeeping when using kallisto
written by ashkan 16
0 votes
0 replies
0 views
Comment: Comment: zero TPM for many gene including housekeeping when using kallisto
written by ashkan 16
0 votes
1 reply
0 views
Comment: Comment: zero TPM for many gene including housekeeping when using kallisto
written by ashkan 16
0 votes
1 reply
1.3K views
How to load count matrix of scRNAseq data from cel-seq2 (96 well plates) protocol into a Seurat object
scrnaseq
updated by Basti 210 • | written by ashkan 16
0 votes
1 reply
779 views
how to choose the best RNAseq protocol for patients sample
rnaseq
updated by Matthias Zepper 524 • | written by ashkan 16
0 votes
0 replies
820 views
validation of pipeline for SV, SNV and repeat analysis
sv repeat snv
written by ashkan 16
0 votes
1 reply
0 views
Comment: C: read count normalization for spike
written by ashkan 16
3 votes
11 replies
28K views
finding adapters from fastq file
rna-seq
updated by ccfpwll 1 • | written by ashkan 16
0 votes
2 replies
1.5K views
grouping the genes based on the length of coding sequence
sequencing
updated by Pierre Lindenbaum 17K • | written by ashkan 16
0 votes
2 replies
52 views
efficient way to take some
sequencing
written by ashkan 16
3 votes
4 replies
4.8K views
how to score the values in a dictionary in python
sequence
updated by Andrzej Zielezinski 1.1K • | written by ashkan 16
0 votes
3 replies
2.8K views
the most frequent isoform of each gene specific to the cell line
rna-seq
written by ashkan 16
0 votes
3 replies
2.3K views
problem with filtering "Sequence unavailable"
sequence
updated by Ram 4.5K • | written by ashkan 16
Latest awards to user
TODO: Awards