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Peter Chung
Peter Chung
Reputation:
210
Joined:
9.9 years ago
Last seen:
4 months ago
Location:
Hong Kong
Latest posts by user
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Comment: Comment: capmq and verifybamid
written by Peter Chung Peter Chung
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2 replies
1.0K views
capmq and verifybamid
bam capmq vcf verifybamid
written by Peter Chung Peter Chung
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1 reply
1.0K views
verifyBAMID in snakemake script error
config snakemake bam vcf verifybamid
updated by Jesse • Jesse • written by Peter Chung Peter Chung
1 vote
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Comment: Comment: Haplotype resolving (phasing) from BAM file
written by Peter Chung Peter Chung
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1 reply
1.5K views
GATK GenomicsDBImport update database error using snakemake
genomicsdbimport snakemake gatk
updated by Jeremy Leipzig Jeremy Leipzig • written by Peter Chung Peter Chung
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1 reply
854 views
Nextflow docker: Error response from daemon
sarek gatk4 docker nextflow
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Peter Chung Peter Chung
1 vote
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Comment: Comment: is it .impute2 format equal to .gen format
written by Peter Chung Peter Chung
1 vote
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Comment: Comment: is it .impute2 format equal to .gen format
written by Peter Chung Peter Chung
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Comment: Comment: Snakemake how to use glob_wilcards properly
written by Peter Chung Peter Chung
1 vote
2 replies
4.2K views
Snakemake how to use glob_wilcards properly
glob wildcards snakemake python
written by Peter Chung Peter Chung
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Answer: A: from phased SNPs to haplotype blocks (or phase sets)
written by Peter Chung Peter Chung
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Comment: A: use gatk phased vcf as input file of HapCut2
written by Peter Chung Peter Chung
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Answer: A: hapcut2 output and figures
written by Peter Chung Peter Chung
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Comment: C: paired-end fastq file remove mismatching lengths of bases and qualities error
written by Peter Chung Peter Chung
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3 replies
3.6K views
paired-end fastq file remove mismatching lengths of bases and qualities error
bbtools fastq reformat repair
updated by Istvan Albert Istvan Albert • written by Peter Chung Peter Chung
2 votes
1 reply
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Answer: A: snakemake output directory
written by Peter Chung Peter Chung
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1 reply
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Comment: C: snakemake output directory
written by Peter Chung Peter Chung
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1 reply
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Comment: C: snakemake output directory
written by Peter Chung Peter Chung
1 vote
7 replies
6.6K views
snakemake output directory
snakemake ngs
updated by 进 • 进 • written by Peter Chung Peter Chung
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1 reply
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Comment: C: gatk collectallelic counts error
written by Peter Chung Peter Chung
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