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Sony Nguyen
Sony Nguyen
Reputation:
20
Joined:
2.9 years ago
Last seen:
3 months ago
Location:
Japan
Google Scholar:
ttAyQp4AAAAJ

Doctoral Student in Plant Genomics, Bioinformatics

Latest posts by user
0 votes
2 replies
329 views
Best methods and tools for synteny analysis for large genome (16Gb genome size) to detect chromosome translocation, inversion ?
translocation synteny inversion
updated by dthorbur dthorbur • written by Sony Nguyen • Sony Nguyen
0 votes
0 replies
94 views
Trait ontology database for wheat to check gene–trait associations ?
trait-ontology gene-id annotation wheat genomics
written by Sony Nguyen • Sony Nguyen
0 votes
0 replies
0 views
Comment: Comment: Constructing a bread wheat pangenome graph using PGGB: per-chromosome vs. whole-
written by Sony Nguyen • Sony Nguyen
0 votes
3 replies
2.2K views
Constructing a bread wheat pangenome graph using PGGB: per-chromosome vs. whole-genome approach and integration of assemblies from different sequencing technologies ?
pangenome structural-variation bread-wheat pggb
updated by samuel.a.odonnell samuel.a.odonnell • written by Sony Nguyen • Sony Nguyen
0 votes
1 reply
0 views
Comment: Comment: Tools for Subsampling Paired-End Reads to 25X Coverage ?
written by Sony Nguyen • Sony Nguyen
0 votes
8 replies
3.3K views
Tools for Subsampling Paired-End Reads to 25X Coverage ?
paired-end fastq depth sequencing coverage
updated by Mensur Dlakic Mensur Dlakic • written by Sony Nguyen • Sony Nguyen
0 votes
0 replies
0 views
Comment: Comment: linear pangenome for crops
written by Sony Nguyen • Sony Nguyen
0 votes
0 replies
0 views
Comment: Comment: The BUSCO assessment of the MAKER annotation results shows a low completeness
written by Sony Nguyen • Sony Nguyen
0 votes
1 reply
890 views
How to compare and complement the missing gene and feature in gff3 file base on available gff3 reference ?
gff3 irgsp1.0 maker
updated by lieven.sterck lieven.sterck • written by Sony Nguyen • Sony Nguyen
0 votes
1 reply
0 views
Comment: Comment: The BUSCO assessment of the MAKER annotation results shows a low completeness
written by Sony Nguyen • Sony Nguyen
0 votes
0 replies
0 views
Comment: Comment: How to filter and keep longest isoform per gene in gff3 file ?
written by Sony Nguyen • Sony Nguyen
1 vote
3 replies
2.2K views
How to filter and keep longest isoform per gene in gff3 file ?
gff isoform maker annotation
written by Sony Nguyen • Sony Nguyen
0 votes
0 replies
555 views
How to extract the missing feature ( gene, CDS, ... when compare 2 gff3 file ?
gff3 compare maker annotation rap-db
written by Sony Nguyen • Sony Nguyen
0 votes
0 replies
0 views
Comment: Comment: BUSCO did not find any match. Retraining did not complete correctly. BUSCO analy
written by Sony Nguyen • Sony Nguyen
0 votes
2 replies
1.5K views
BUSCO did not find any match. Retraining did not complete correctly. BUSCO analysis failed!
augustus pipeline maker annotation busco
updated by GenoMax GenoMax • written by Sony Nguyen • Sony Nguyen
0 votes
0 replies
1.1K views
ERROR with Maker annotation: The assumed RepeatMasker installation directory /opt/home/sony/miniconda3/envs/MAKER2/share/RepeatMasker does not appear to be correct. E.g it does not contain a 'Lib
repeatmasker. maker. annotation.
written by Sony Nguyen • Sony Nguyen
0 votes
2 replies
882 views
How to find identical sequences in genome fasta file (by Python or any possible program) ?
fasta
updated by Ram Ram • written by Sony Nguyen • Sony Nguyen
0 votes
1 reply
1.6K views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort. samtools. bam. sam.
updated by GenoMax GenoMax • written by Sony Nguyen • Sony Nguyen
0 votes
2 replies
0 views
Comment: Comment: Which command ro run MAKER pipeline for gene annotation ?
written by Sony Nguyen • Sony Nguyen
0 votes
4 replies
2.2K views
Which command ro run MAKER pipeline for gene annotation ?
run. command to makerpipeline.
updated by GenoMax GenoMax • written by Sony Nguyen • Sony Nguyen
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