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curious
curious
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Last seen:
2 months ago
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outer space
Latest posts by user
0 votes
1 reply
96 views
What are best practices for which sites to report Ti/Tv on for human WGS QC?
transition transversion
updated by SeqBench • SeqBench • written by curious curious
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0 replies
0 views
Answer: Answer: Manual corrections for allele mismatches
written by curious curious
1 vote
1 reply
1.2K views
Is this an appropriate command for estimating contaminatin in a germline WGS sample using GATK?
gatk
updated by Kevin Blighe Kevin Blighe • written by curious curious
0 votes
0 replies
0 views
Comment: Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
written by curious curious
0 votes
2 replies
2.9K views
Help understanding this per base sequence content failure fastqc plot
fastqc
updated by lieven.sterck lieven.sterck • written by curious curious
0 votes
1 reply
0 views
Comment: Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
written by curious curious
0 votes
5 replies
7.2K views
Does this adapter content from fastqc to warrant trimming prior to alignment?
fastqc bwa-mem multiqc
written by curious curious
0 votes
0 replies
0 views
Comment: Comment: ERROR::INVALID_TAG_NM:Record A, Read name B, NM tag (nucleotide differences) in
written by curious curious
0 votes
2 replies
1.6K views
ERROR::INVALID_TAG_NM:Record A, Read name B, NM tag (nucleotide differences) in file [0] does not match reality [1]
bwa
written by curious curious
0 votes
1 reply
0 views
Comment: Comment: Why am I getting the exact same MarkDuplicates results when passing a query or
written by curious curious
0 votes
0 replies
0 views
Comment: Comment: Why am I getting the exact same MarkDuplicates results when passing a query or
written by curious curious
0 votes
4 replies
1.6K views
Why am I getting the exact same MarkDuplicates results when passing a query or coordinate sorted bam?
picard bwa
updated by GenoMax GenoMax • written by curious curious
0 votes
1 reply
0 views
Comment: Comment: How to preserve full FASTQ header through alignment and CRAM recovery
written by curious curious
1 vote
5 replies
2.3K views
How to preserve full FASTQ header through alignment and CRAM recovery
bam fastq cram
updated by GenoMax GenoMax • written by curious curious
0 votes
1 reply
0 views
Comment: Comment: How common is it to split fastq files prior to bwa mem to increase parallelizati
written by curious curious
0 votes
0 replies
0 views
Comment: Comment: How common is it to split fastq files prior to bwa mem to increase parallelizati
written by curious curious
2 votes
1 reply
0 views
Comment: Comment: How common is it to split fastq files prior to bwa mem to increase parallelizati
written by curious curious
0 votes
11 replies
3.1K views
How common is it to split fastq files prior to bwa mem to increase parallelization?
mem bwa alignment
updated by Darked89 Darked89 • written by curious curious
0 votes
2 replies
1.3K views
What do the transcript variant # mean in RefSeq?
refseq
updated by Ram Ram • written by curious curious
0 votes
0 replies
0 views
Comment: Comment: How to convert Haps file to vcf file?
written by curious curious
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