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Venter Genome Vcf

Hi all, I was wondering if there was a VCF version of Venter's genome? There is a GFF file but not sure if there was a VCF file?

Thanks in advance.

vcf
• 4,817 views • link
updated by Jeremy Leipzig Jeremy Leipzig • written by win win

I can't find an hg38 version, and the old VCF seems to be of a different header format so I am having difficulty converting it to hg38 from hg19. Anybody have an hg38 update for this?

• 0 views • link
written by ericrkofman • ericrkofman

2 answers

We've got it on the Ensembl FTP site.

• 15 views • link
written by Emily Emily

thanks, just what I was looking for.

• 0 views • link
written by win win

Please be sure to mark her answer as accepted.

• 0 views • link
written by Dan D Dan D

Wonderful! Even updated to latest genome version.

Do you have a full genome version of Venter/Watson updated to hg38 somewhere?

• 1 views • link
written by Endre Bakken Stovner Endre Bakken Stovner

We just have the VCF.

• 1 views • link
written by Emily Emily

The link above appears to be broken. Does anyone have the new link?

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written by Tawny Tawny

there are some violations in this VCF:

  • Invalid count number, with fixed count the number should be 1 or higher: key=INFO name=TSA type=String desc=Type of sequence alteration
  • Key GT found in VariantContext field FORMAT at chr1:13001418 but this key isn't defined in the VCFHeader
• 0 views • link
written by Jeremy Leipzig Jeremy Leipzig

Here's a SNP list. It's not VCF, but it contains similar data.

• 16 views • link
written by Dan D Dan D

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