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1000 Genomes Vcf File

hi all. i was wondering if someone could let point me the direction of the VCF file from 1000 genomes which has from all chromosomes for all samples?

thanks in advance.

vcf 1000genomes
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updated by Ram Ram • written by win win

2 answers

You can find the VCF files for phase 1 here: ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase1/analysis_results/integrated_call_sets/

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written by fatstrat389 • fatstrat389

those are individual chromosome fies, i believe there is one file with data from all chromosomes but i cannot seem to find that.

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written by win win

does this file have genotypes for the sites?

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written by win win

There haven't been any "whole genome" VCFs produced by the 1000 Genomes Project since the Pilot phase.

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updated by Ram Ram • written by Adam Adam

You might want to google ALL.2of4intersection.20100804.genotypes.vcf.gz

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updated by Ram Ram • written by Jeremy Leipzig Jeremy Leipzig

That is a very old file, you are far better using ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase1/analysis_results/integrated_call_sets/

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updated by Ram Ram • written by Laura Laura

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