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Jordan M Eizenga
Jordan M Eizenga
Reputation:
780
Joined:
6.9 years ago
Last seen:
5 months ago
Location:
USA, Santa Cruz, CA, University of California Santa Cruz
Google Scholar:
rWNHPpAAAAAJ
Twitter:
@jeizenga

I am a postdoc at the University of California Santa Cruz Genomics Institute. My research focuses on algorithm development for computational pangenomics, and I am one of the primary contributors to the VG project.

Latest posts by user
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Comment: Comment: GATK SNP calling from BAM
written by Jordan M Eizenga • Jordan M Eizenga
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Comment: Comment: Split chromosome into smaller fragments to save memory when build xg and gcsa in
written by Jordan M Eizenga • Jordan M Eizenga
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Answer: Answer: Split chromosome into smaller fragments to save memory when build xg and gcsa in
written by Jordan M Eizenga • Jordan M Eizenga
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Comment: Comment: Trouble building combined pangenome graph with circularized genomes + embedded O
written by Jordan M Eizenga • Jordan M Eizenga
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Answer: Answer: Question about vg giraffe, vg surject and Visualization tool for mapping result
written by Jordan M Eizenga • Jordan M Eizenga
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Comment: Comment: Is vg toolkit suitable for haplotype calling?
written by Jordan M Eizenga • Jordan M Eizenga
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Comment: Comment: Is vg toolkit suitable for haplotype calling?
written by Jordan M Eizenga • Jordan M Eizenga
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Comment: Comment: Is vg toolkit suitable for haplotype calling?
written by Jordan M Eizenga • Jordan M Eizenga
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Answer: Answer: Is vg toolkit suitable for haplotype calling?
written by Jordan M Eizenga • Jordan M Eizenga
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Comment: Comment: What does vg autoindex mpmap do?
written by Jordan M Eizenga • Jordan M Eizenga
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Answer: Answer: What does vg autoindex mpmap do?
written by Jordan M Eizenga • Jordan M Eizenga
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Answer: Answer: Annotate GFA with coverage depth
written by Jordan M Eizenga • Jordan M Eizenga
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Comment: Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
written by Jordan M Eizenga • Jordan M Eizenga
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Answer: Answer: Which pangenome graph (full/clip/filter/sampled) to use when align RNA-seq with
written by Jordan M Eizenga • Jordan M Eizenga
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Comment: Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
written by Jordan M Eizenga • Jordan M Eizenga
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Answer: Answer: vg: transfer FASTQ comment to SAM tag a la `bwa mem -C`
written by Jordan M Eizenga • Jordan M Eizenga
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Comment: Comment: split gamp by chromosome or extract specific regions.
written by Jordan M Eizenga • Jordan M Eizenga
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Comment: Comment: vg autoindex memory issues Signal 6 has occured
written by Jordan M Eizenga • Jordan M Eizenga
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Answer: Answer: fragment size estimation during vg mpmap and rpvg
written by Jordan M Eizenga • Jordan M Eizenga
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Answer: Answer: Does vg provides an api?
written by Jordan M Eizenga • Jordan M Eizenga
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