Is there anything similar in VG to the -C option in BWA MEM?
From the BWA mem manual
-C Append append FASTA/Q comment to SAM output. This option can be used to transfer read meta information (e.g. barcode) to the SAM output. Note that the FASTA/Q comment (the string after a space in the header line) must conform the SAM spec (e.g. BC:Z:CGTAC). Malformated comments lead to incorrect SAM output.
Basically we have a comment in SAM tag format in our fastq file that we want to transfer over to the BAM output in VG.
If not already implemented, could I request this as a feature?
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written
by
tahermun •
1 answer
This feature has been added and should be included in the next scheduled release. The option is called --comments-as-tags, and it's available in all of vg's mapping tools.
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