I try to run cd-hit-est with a cluster threshold less than 0.8 but every time I get the following error:
Fatal Error: invalid clstr threshold, should >=0.8 Program halted !!
cd-hit-est -i seq.fasta -o out.fasta -d 0 -T 10 -g 1 -M 10000 -c 0.6 -n 4
This command does not have any problem with cd-hit. The following command works well:
cd-hit -i seq.fasta -o out.fasta -d 0 -T 10 -g 1 -M 10000 -c 0.6 -n 4
Am I missing something?