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nlehmann
nlehmann
Reputation:
150
Joined:
10.3 years ago
Last seen:
1.7 years ago
Location:
France
Twitter:
@NathalieLehman
Latest posts by user
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Comment: Comment: Plot assigned / unassigned reads distance to 3'UTR
written by nlehmann nlehmann
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2 replies
1.4K views
Plot assigned / unassigned reads distance to 3'UTR
bedtools rna-seq closest
written by nlehmann nlehmann
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1 reply
1.3K views
How to interpret a single cell RNA-seq experiment with 10 times less cells but correct number of reads ?
single-cell 10xgenomics cellranger
written by nlehmann nlehmann
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Comment: C: IGV create genome: cytoband not working
written by nlehmann nlehmann
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1 reply
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Comment: C: Is there a way to change gene_id in a GTF file where gene_id is actually a gene_
written by nlehmann nlehmann
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1 reply
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Comment: C: Is there a way to change gene_id in a GTF file where gene_id is actually a gene_
written by nlehmann nlehmann
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Comment: C: Best way to change gene_id in a GTF file where gene_id is identical to gene_name
written by nlehmann nlehmann
1 vote
7 replies
3.8K views
Is there a way to change gene_id in a GTF file where gene_id is actually a gene_name (and multiple genes have the same gene names) ?
rna-seq assembly ucsc
written by nlehmann nlehmann
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1 reply
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Comment: C: Detect discrepancies in GFF files
written by nlehmann nlehmann
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Comment: C: Comparisons of genes coordinates
written by nlehmann nlehmann
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Comment: C: Detect discrepancies in GFF files
written by nlehmann nlehmann
1 vote
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Comment: C: Detect discrepancies in GFF files
written by nlehmann nlehmann
0 votes
7 replies
3.1K views
Detect discrepancies in GFF files
rna-seq gffread agat ucsc
updated by Biostar Biostar • written by nlehmann nlehmann
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2 replies
1.5K views
Comparisons of genes coordinates
gene rna-seq
written by nlehmann nlehmann
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Comment: C: Fraction reads in cells CELLRANGER
written by nlehmann nlehmann
1 vote
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Comment: C: UCSC track hub: how to best include a GTF / GFF file
written by nlehmann nlehmann
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Comment: C: UCSC track hub: how to best include a GTF / GFF file
written by nlehmann nlehmann
2 votes
5 replies
4.8K views
UCSC track hub: how to best include a GTF / GFF file
ucsc trackhub annotation
updated by Luis Nassar Luis Nassar • written by nlehmann nlehmann
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Comment: C: How to create 'gene' and 'transcript' entries in a GTF containing only exons
written by nlehmann nlehmann
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Answer: A: stringtie coverage -c parameter?
written by nlehmann nlehmann
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