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0 votes
4 replies
1.1K views
Best Kits for RNA extraction from different fish tissue for annotation and gene expression analysis
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updated by dsull 781 • | written by Human 0
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Job: Exciting 2024 Summer Internship Opportunity in Translational Genetics Arrowhead Pharmaceuticals!
intern
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7 replies
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How to download dbSNP153 vcf files in hg19/GRCH37 version
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updated by bounlu 27 • | written by Shicheng Guo 963
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Is there a common acceptance criteria for sample contamination?
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updated by jared.andrews07 1.9K • | written by CY 77
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How to compute gsea overlap of gene set with R
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Vg Call error multiple paths detected using HPRC-GRCH38 ref
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updated by Jordan M Eizenga 78 • | written by Alexandria A. 0
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Go from protein mutation back to gene mutation
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4 replies
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Why is it often necessary to perform z-transformation on quantitative data when doing GWAS?
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written by Isaac 0
0 votes
2 replies
955 views
SCPA analysis with all qvals = 0
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written by bio_info 2
0 votes
5 replies
1.4K views
how to confirm that a particular plant gene shows resistance to insects through bioinformatics
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updated by dthorbur 350 • | written by Bushra Bibi 8
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2 replies
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Surpsrisingly short reads in illumina 1.9 Miseq runs (2X300)
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written by Mohamed Samir 3
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3 replies
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Odd output format for bcftools isec
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written by Begonia_pavonina 22
0 votes
5 replies
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Combining VG graphs
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updated by LauferVA 497 • | written by AshleeThomson 13
1 vote
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1.5K views
Where can I download human VCF files?
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updated by Michael Dondrup 5.6K • | written by majd.abdulghani 2
1 vote
2 replies
1.4K views
Does it make sense to use scRNAseq for this experiment?
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written by Mark 6
0 votes
3 replies
1.3K views
I got qlen = 276 using bam_cigar2qlen in htslib but I count that cigar by myself, it should be 263.
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0 votes
1 reply
858 views
Trimming from 151bp to 65bp
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updated by GenoMax 16K • | written by QX 9
0 votes
0 replies
604 views
Indexing individual nucleotides across genome with NumPy-compatible output
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written by Michael Gruenstaeudl 1
0 votes
5 replies
1.5K views
Retrive amino acids sequences from NCBI E-Direct
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0 votes
6 replies
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Forum: How do you make an original contribution to knowledge in applied bioinformatics?
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0 votes
0 replies
665 views
Adapter contamination trimming using Cutadapt
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written by citronxu 2
0 votes
3 replies
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interpreting hisat2 alignment summary from paired end reads
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written by Bushra Bibi 8
0 votes
0 replies
425 views
mSVM for detecting hub genes
clustring smv hub_genes
written by Morteza 0
0 votes
6 replies
1.7K views
RNA Seq Paired End High Duplication Rate
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updated by GenoMax 16K • | written by Tara 0
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7 replies
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How to generate an oncoplot with most frequently mutated genes using maftools with annovar annotated output files
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0 votes
0 replies
711 views
Can I combine several pseudobulked scRNAseq and bulk RNAseq datasets for DESeq2 analysis?
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updated by Ram 4.5K • | written by aquamarine 0
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How to cluster microbial samples after principal coordinate analysis based on beta-diversity
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0 replies
654 views
How to get the sample matrix programmatically, TCGA
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2 replies
884 views
Filtering VCF - minimal valid filter parametrs
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0 votes
10 replies
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3 replies
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6 replies
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NCBI CLI Download all proteins from Taxid
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updated by GenoMax 16K • | written by dthorbur 350
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2 replies
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Single cell - integration after demultiplexing samples?
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0 votes
0 replies
750 views
Polyphen-2 for non-human organisms
polyphen-2
written by Vitis 256
1 vote
4 replies
1.4K views
Retrieving oxyanion hole residues positions from UniProt or PDB databases
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updated by Elisabeth Gasteiger 243 • | written by Mariana 5
0 votes
0 replies
774 views
Using CNVkit for checking normal samples
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written by DGTool 30
0 votes
0 replies
521 views
How to count number of haplotypes and haplotype frequency from phased vcf files?
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written by Arline 0
1 vote
11 replies
2.4K views
Asking for parallel jobs setting on HPC when analyzing sequencing data
hpc parallel
updated by Darked89 469 • | written by QX 9
0 votes
0 replies
523 views
monolce3 object: change groups naming
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written by sooni 2
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1 reply
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Batch correction prior to running DESEQ2
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updated by Ram 4.5K • | written by jayju 0
2 votes
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News: Online - Autumn School in Bioinformatics
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Add Subscripts to labels in Seurat DimPlot
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updated by bk11 312 • | written by Saran 6
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RNA-seq differentially expressed genes (DEGs) with low fold change values
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find DEG of monocle 3 object using tradeSeq
tradeseq
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Are there different ways of calculating log2FC?/How do I manually calculate gene log2FCs for continuous variables?
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QC filtering for 10x Single Cell Gene Expression Flex Fixed RNA Profiling
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0 votes
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