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Vitis
Vitis
Reputation:
2,560 (Trusted)
Joined:
15.2 years ago
Last seen:
1.5 years ago
Location:
New York

A plant geneticist from a taxonomist and naturalist background. Now trying to bridge classic genetics and evolutionary biology with ever-expanding genomic data and bioinformatic tools.

Latest posts by user
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Comment: Comment: PROVEAN input for stop codon
written by Vitis 256
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2 replies
1.2K views
PROVEAN input for stop codon
variant provean
written by Vitis 256
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0 replies
744 views
Polyphen-2 for non-human organisms
polyphen-2
written by Vitis 256
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1 reply
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Answer: Answer: no output from GATK CombineGVCFs
written by Vitis 256
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Answer: Answer: Seurat sctransform - does anyone know of a good explanation for biologists?
written by Vitis 256
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Answer: Answer: Biopython Seqio.Index() And Seqio.Index_Db() Very Slow For Large Sequence
written by Vitis 256
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Answer: Answer: Y Chromosome Heterozygotes?
written by Vitis 256
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1 reply
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Comment: C: Gene expression heatmap following pseudotime analysis
written by Vitis 256
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Comment: C: Gene expression heatmap following pseudotime analysis
written by Vitis 256
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Comment: C: Gene expression heatmap following pseudotime analysis
written by Vitis 256
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7 replies
8.2K views
Gene expression heatmap following pseudotime analysis
rna-seq
updated by rpolicastro 1.3K • | written by Vitis 256
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1 reply
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Comment: C: GATK GenomicsDBImport intervals
written by Vitis 256
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Comment: C: Analysis of host-parasite mixed transcriptome
written by Vitis 256
1 vote
3 replies
1.6K views
Analysis of host-parasite mixed transcriptome
rna-seq alignment
updated by GenoMax 16K • | written by Vitis 256
1 vote
0 replies
1.1K views
Variant calling from short/long read hybrid BAM
snp sequencing
written by Vitis 256
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Answer: A: Circos Plot for synteny file
written by Vitis 256
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Answer: A: How are haplotypes/heterozygosity resolved in sequence assembly?
written by Vitis 256
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1 reply
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Answer: A: A good tutorial for eukaryotic phylogeny?
written by Vitis 256
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Answer: A: BWA Mem -M flag (mark split hits) effect on structural variation calling
written by Vitis 256
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Answer: A: Variant Annotation and prioritization
written by Vitis 256
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