This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Saran
Saran
Reputation:
60
Joined:
3.9 years ago
Last seen:
2.0 years ago
Location:
United States

No profile information

Latest posts by user
0 votes
1 reply
1.4K views
Add Subscripts to labels in Seurat DimPlot
dimplot ggplot2 seurat rstudio
updated by bk11 • bk11 • written by Saran • Saran
0 votes
1 reply
817 views
Extract Di-nucleotide/Tri-Nucleotide substitution frequencies from MSA/VCF file
msa substitution vcfstats evolution vcf
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Saran • Saran
2 votes
1 reply
1.6K views
Using DADA2 for finding viral sequence variants
rnaseq amplicon dada2 variant
updated by antonioggsousa antonioggsousa • written by Saran • Saran
0 votes
0 replies
785 views
Compute Abundance counts for full-length Sequences?
abundance rnaseq fasta amplicon
written by Saran • Saran
0 votes
0 replies
0 views
Comment: Comment: Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
written by Saran • Saran
0 votes
5 replies
3.4K views
Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
limma edger voom rna-seq rna
updated by Gordon Smyth Gordon Smyth • written by Saran • Saran
1 vote
3 replies
1.8K views
Count SNP per read
vcf snp rna-seq msa
updated by colindaven colindaven • written by Saran • Saran
0 votes
1 reply
995 views
Identifying Mutation Frequency Changes in MSAs over time?
mutation fasta msa mutationrate rna-seq
updated by LauferVA LauferVA • written by Saran • Saran
0 votes
2 replies
1.6K views
Flitering Genes in RNA-Seq causes more significant FDR Adjusted P-Val DEGs?
limma rna voom edger rna-seq
updated by ATpoint ATpoint • written by Saran • Saran
0 votes
0 replies
569 views
Differential Expression Analysis of single cell data with large difference in cell count for groups.
scrna seurat deg
written by Saran • Saran
0 votes
2 replies
1.4K views
Cause of short sequences in Amplicon Sequencing?
illumina asv amplicon dada2
written by Saran • Saran
1 vote
1 reply
1.1K views
Visualize variants and percentage of variants from one sample of Amplicon Seq data?
amplicon pcr rnaseq gatk bwa
updated by cmdcolin cmdcolin • written by Saran • Saran
0 votes
1 reply
1.0K views
Find ASVs for Non-Microbial Data
amplicon asv pcr bwa vcf
updated by andres.firrincieli andres.firrincieli • written by Saran • Saran
0 votes
1 reply
0 views
Comment: Comment: Error in reference fasta file when indexing with samtools
written by Saran • Saran
0 votes
0 replies
681 views
Display fraction of mutations and variants for Amplicon Sequencing sample?
pcr amplicon vcf bwa
written by Saran • Saran
1 vote
0 replies
0 views
Comment: Comment: Error in reference fasta file when indexing with samtools
written by Saran • Saran
0 votes
1 reply
0 views
Comment: Comment: Error in reference fasta file when indexing with samtools
written by Saran • Saran
1 vote
7 replies
3.9K views
Error in reference fasta file when indexing with samtools
samtools rna-seq
updated by Ram Ram • written by Saran • Saran
0 votes
2 replies
1.3K views
Is the RNA- sequencing quality too bad for analysis?
fastqc rna pcr bwa minimap2
updated by LChart LChart • written by Saran • Saran
0 votes
0 replies
1.0K views
BWA-MEM : skip orientation FR as there are not enough pairs ?
pcr sequencing bwa illumina
written by Saran • Saran
Latest awards to user
TODO: Awards