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0 votes
1 reply
841 views
Alternatives RAST annotation
database alternative rast annotation
updated by GenoMax GenoMax • written by emma.vankerckhove • emma.vankerckhove
0 votes
7 replies
2.2K views
Constructing single sequence genome assembly out of short reads
short reads assembly
written by Bushra Bibi Bushra Bibi
1 vote
13 replies
3.0K views
How do i calculate the mean of triplicates in a data.frame based on pattern?
tidyverse r
updated by gglim • gglim • written by Assa Yeroslaviz Assa Yeroslaviz
0 votes
3 replies
1.3K views
RNA-Seq analysis
rna-seq
updated by Physalia-courses Physalia-courses • written by zahrakhanyousufzai5 • zahrakhanyousufzai5
0 votes
5 replies
1.4K views
Filtering reads that map to both references
bwa insertion alignment reference
updated by Trivas • Trivas • written by michael.flower.14 • michael.flower.14
0 votes
0 replies
410 views
Results of NOT FOUND encountered when running SCENIC
scenic
written by smilewang997700 • smilewang997700
0 votes
1 reply
941 views
monocle3 dot plot by groups and each cell types
monocle3 r
updated by zx8754 zx8754 • written by sooni • sooni
0 votes
12 replies
4.3K views
Set the same Y scale for different plots
ggplot2 r
written by G.S • G.S
0 votes
1 reply
1.0K views
Intersection of multiple vcf files
isec vcf bcftools
updated by Jeremy Leipzig Jeremy Leipzig • written by avelarbio46 • avelarbio46
1 vote
3 replies
1.5K views
when I use htslib to write a bam. Error of "truncated file" shows by samtools
bam htslib
updated by GenoMax GenoMax • written by Aaron • Aaron
0 votes
0 replies
445 views
Using a within population reference genome - Recombination
relernn vcf popgen recombination
written by dylan • dylan
1 vote
1 reply
1.1K views
Why does WGCNA use weighted correlation instead of Pearson correlation?
wgcna
updated by allingt • allingt • written by remagen • remagen
0 votes
0 replies
489 views
reference geome gaf file obsolent GO replacement
gaf go
written by Nicolas • Nicolas
1 vote
1 reply
1.0K views
Can I count UMI-barcode combination without mapping?
hydrop protein umi umi-tools
updated by GenoMax GenoMax • written by Assa Yeroslaviz Assa Yeroslaviz
0 votes
2 replies
986 views
How do I check if a DNA sequence of a gene is supported by RNAseq data?
genetics rna-seq phase-variation alignment
written by Jack • Jack
1 vote
4 replies
4.7K views
Illumina EPIC v2 IlmnIDs and probe names
illumina epic epicv2
updated by Papyrus Papyrus • written by christine.a.pedersen • christine.a.pedersen
0 votes
7 replies
4.5K views
Best practices in Fungal Genome Assembly
illumina assembly nanopore genome
updated by samuel.a.odonnell samuel.a.odonnell • written by SomeOne • SomeOne
0 votes
4 replies
1.7K views
Confirmation required on how DiffBind generates union of regions (min. 1bp overlap or gap)?
diffbind
written by Ian Ian
1 vote
2 replies
1.5K views
Is there any minimum number of counts in scRNAseq to consider that a gene is expressed?
scrnaseq single-cell seurat scanpy umi
written by ev97 • ev97
0 votes
9 replies
6.3K views
Error with pheatmap - 'from' must be a finite number
pheatmap r deseq2
updated by zx8754 zx8754 • written by vmpsb • vmpsb
0 votes
7 replies
2.8K views
Z score
z-score
updated by ATpoint ATpoint • written by SKY • SKY
0 votes
2 replies
1.2K views
Polygenic Risk Score calculation
snp polygene prs variants
written by ashaneev07 • ashaneev07
1 vote
0 replies
431 views
EXOME DEPTH - CNV
cnv
written by Neha • Neha
0 votes
5 replies
1.3K views
coding and non-coding region of the viral genome
viral-genome
updated by dthorbur dthorbur • written by G.S • G.S
0 votes
2 replies
969 views
dbNSFP4.7a database format to Annovar Format?
snp annovar ngs dbnsfp
updated by Ram Ram • written by Clark_BioMorgan • Clark_BioMorgan
1 vote
5 replies
1.8K views
Search within posts based on tags using the Biostars API
api meta
updated by Ram Ram • written by Bálint • Bálint
0 votes
0 replies
640 views
Funcotator gnomAD incoherent number of output fields
gatk gnomad funcotator
updated by Ram Ram • written by jaime alvarez • jaime alvarez
0 votes
1 reply
905 views
Help with proteomics downstream analysis
mass-spectrometry proteomics
updated by Ram Ram • written by Álvaro • Álvaro
0 votes
3 replies
1.6K views
How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Package?
multi-omics cnv r
updated by Zhenyu Zhang Zhenyu Zhang • written by Ngrin • Ngrin
1 vote
0 replies
400 views
Calculating F_IS, F_IT on ancient DNA
adna
written by devenvyas devenvyas
0 votes
0 replies
548 views
The number of region with the motif sequence is different between HOMER outputs
findmotifsgenome homer annotatepeaks
written by Aki • Aki
0 votes
4 replies
3.0K views
Cut&Run and heatmap
macs2 bowtie2
updated by gglim • gglim • written by qudrat.nii • qudrat.nii
0 votes
12 replies
9.1K views
txt file to bigwig
meme bigwig
updated by GenoMax GenoMax • written by tanni93 • tanni93
0 votes
2 replies
1.2K views
Help me with Heatmap
rna-seq r deseq2
updated by zx8754 zx8754 • written by vmpsb • vmpsb
0 votes
2 replies
931 views
identify the coordinate for coding and non_coding region.
coding non_coding
written by G.S • G.S
16 votes
25 replies
68K views
Download All The Bacterial Genomes From Ncbi
ncbi
updated by GenoMax GenoMax • written by rehma.ar • rehma.ar
0 votes
2 replies
4.8K views
Salmon vs Kallisto vs RSEM
rsem quantification kallisto salmon
written by Mohamed Abderrahmane • Mohamed Abderrahmane
1 vote
0 replies
754 views
virus genome annotation
annotation gff3 consensus ncbi coding_regions
updated by Ram Ram • written by G.S • G.S
2 votes
7 replies
5.0K views
Tool: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID
ensembl biomart annotation
written by Shred Shred
0 votes
1 reply
845 views
Subset of Transcripts- How do I proceed with it?
stringtie
updated by Carlo Yague Carlo Yague • written by Varsha • Varsha
0 votes
2 replies
5.4K views
How can run cd-hit-est with a clstr threshold less than 0.8?
cd-hit cluster
updated by Asaf Asaf • written by m.koohi.m m.koohi.m
0 votes
2 replies
1.2K views
Tools for chromosomal aneuploidy detection
human-genetics aneuploidy ngs
updated by Ram Ram • written by adarsh • adarsh
0 votes
0 replies
507 views
PyRMD
machine-learning cheminformatics virtual-screening
updated by Ram Ram • written by s • s
1 vote
5 replies
1.8K views
Invalid CIGAR after using bam clipOverlap
validatesamfile cigar bam clipoverlap
written by MboiTui • MboiTui
0 votes
0 replies
544 views
Determining rs ids from SNP HGV base ID?
rsid hgv snp
updated by Ram Ram • written by Katherine • Katherine
0 votes
5 replies
1.8K views
How to add Ensembl ids after Pseudobulk analysis by DESeq2
seurat pseudobulk single-cell deseq2 scrna
written by Sara • Sara
0 votes
1 reply
2.1K views
Facing problem with single cell rna seq annotation using singleR
singler scrna-seq
updated by Ram Ram • written by TNF_alpha • TNF_alpha
0 votes
0 replies
667 views
Imputed data doesn't match directly genotyped APOE genotype
apoe directgenotyping imputation
written by kl • kl
0 votes
0 replies
419 views
Tubemap multiseq
vg
written by karciharun42 • karciharun42
1 vote
3 replies
8.3K views
Attempt to set 'rownames' on an object with no dimensions
r microbiome spieceasi
updated by GenoMax GenoMax • written by ks.sholohova • ks.sholohova
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