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0 votes
7 replies
2.6K views
How to generate an oncoplot with most frequently mutated genes using maftools with annovar annotated output files
oncoplot maftools annovar
updated by Ram Ram • written by sainavyav22 • sainavyav22
0 votes
0 replies
652 views
Can I combine several pseudobulked scRNAseq and bulk RNAseq datasets for DESeq2 analysis?
deseq2 differential-expression
updated by Ram Ram • written by aquamarine • aquamarine
0 votes
1 reply
1.2K views
How to cluster microbial samples after principal coordinate analysis based on beta-diversity
clustering bray-curtis microbiome pcoa
updated by Mensur Dlakic Mensur Dlakic • written by Bertalan_Takacs • Bertalan_Takacs
0 votes
0 replies
648 views
How to get the sample matrix programmatically, TCGA
r cbioportal python tcga
written by pcomps49 • pcomps49
0 votes
2 replies
870 views
Filtering VCF - minimal valid filter parametrs
vcf
written by Lukas • Lukas
0 votes
10 replies
2.2K views
Forum: Posts getting removed?
meta biostars
updated by Ram Ram • written by noodle noodle
0 votes
3 replies
2.7K views
Pseudobulking per patient
scrna-seq seurat pseudobulk
updated by jared.andrews07 jared.andrews07 • written by bio_info • bio_info
3 votes
6 replies
4.5K views
NCBI CLI Download all proteins from Taxid
ncbi
updated by GenoMax GenoMax • written by dthorbur dthorbur
0 votes
2 replies
1.0K views
Single cell - integration after demultiplexing samples?
integration demultiplexing single-cell
written by txema.heredia • txema.heredia
0 votes
0 replies
705 views
Polyphen-2 for non-human organisms
polyphen-2
written by Vitis Vitis
1 vote
4 replies
1.3K views
Retrieving oxyanion hole residues positions from UniProt or PDB databases
oxyanion proteins pdb uniprot hole
updated by Elisabeth Gasteiger Elisabeth Gasteiger • written by Mariana • Mariana
0 votes
0 replies
768 views
Using CNVkit for checking normal samples
cnv cnvkit
written by DGTool • DGTool
0 votes
0 replies
513 views
How to count number of haplotypes and haplotype frequency from phased vcf files?
haplotypes
written by Arline • Arline
1 vote
11 replies
2.3K views
Asking for parallel jobs setting on HPC when analyzing sequencing data
hpc parallel
updated by Darked89 Darked89 • written by QX • QX
0 votes
0 replies
516 views
monolce3 object: change groups naming
r monocle3
written by sooni • sooni
0 votes
1 reply
1.2K views
Forum: Mailing list for academic programs and positions
masters phd
updated by Ram Ram • written by Eren • Eren
0 votes
2 replies
1.2K views
Batch correction prior to running DESEQ2
r rna-seq deseq2 dge transcriptomics
updated by Ram Ram • written by jayju • jayju
2 votes
3 replies
1.4K views
News: Online - Autumn School in Bioinformatics
singularity ngs phylogenomics rna-seq docker
written by Physalia-courses Physalia-courses
0 votes
1 reply
1.4K views
Add Subscripts to labels in Seurat DimPlot
dimplot ggplot2 seurat rstudio
updated by bk11 • bk11 • written by Saran • Saran
0 votes
11 replies
3.9K views
RNA-seq differentially expressed genes (DEGs) with low fold change values
combat-seq rna-seq deseq2 degs
updated by swbarnes2 swbarnes2 • written by singlecell_bio • singlecell_bio
0 votes
3 replies
1.4K views
find DEG of monocle 3 object using tradeSeq
tradeseq
updated by Ram Ram • written by synat.keam • synat.keam
0 votes
3 replies
2.7K views
Are there different ways of calculating log2FC?/How do I manually calculate gene log2FCs for continuous variables?
scrna-seq
updated by ATpoint ATpoint • written by j.parker1993 • j.parker1993
0 votes
3 replies
1.6K views
QC filtering for 10x Single Cell Gene Expression Flex Fixed RNA Profiling
10x seurat scrna-seq
written by yura.grabovska • yura.grabovska
0 votes
2 replies
972 views
RNA seq
deseq2
updated by Ram Ram • written by Sudip • Sudip
0 votes
3 replies
3.4K views
InferCNV results interpretation
cnv infercnv scrna-seq
updated by jared.andrews07 jared.andrews07 • written by Yingying • Yingying
0 votes
2 replies
1.2K views
Combining microarray, RNA Seq, whole & exome sequencing
microarray rna
updated by i.sudbery i.sudbery • written by Nona • Nona
1 vote
6 replies
2.5K views
PCA plot no distinct cluster. Only p < 0.05 indicates significant DEGs, while adj p < 0.05 does not.
rna-seq padj p-value
written by May Ling • May Ling
0 votes
1 reply
806 views
Alternative Database for Somatic Indel Realignment (COSMIC Alternative)
cosmic
updated by DGTool • DGTool • written by ManuelDB ManuelDB
0 votes
2 replies
2.3K views
Minimap2 chimeric reads
minimap2 chimeric-reads
updated by cmdcolin cmdcolin • written by Fadwa • Fadwa
0 votes
7 replies
1.9K views
small RNA-seq length distribution of 100nt?
small-rnaseq fastp mirnas
updated by GenoMax GenoMax • written by karlaarz • karlaarz
0 votes
0 replies
462 views
Estimate/calculate power for two-sample Mendelian randomization?
mr
written by huynguyenacademia • huynguyenacademia
1 vote
0 replies
764 views
Blog: Long-read single-cell Sequencing
rnaseq long-read single-cell scrna-seq transcriptomics
written by Gabby • Gabby
0 votes
2 replies
1.1K views
TSS sites annotation for hg38
tss hg38 annotation
written by octpus616 • octpus616
0 votes
0 replies
410 views
kegg pathway analysis
metabolic-pathway gibbs-energy
updated by Ram Ram • written by yuxiang • yuxiang
0 votes
2 replies
1.2K views
newbie question: why the length of adapter is not fixed?
library construction sequencing
written by Dora • Dora
0 votes
5 replies
1.5K views
CNVnator Installation
cnv cnvnator wgs
updated by Ram Ram • written by Wasim • Wasim
0 votes
2 replies
2.2K views
Using samtools with GCS (google cloud storage) on a docker container seems to give "Protocol Not Supported" error
samtools gcs
updated by aw7 • aw7 • written by abhishekghadge • abhishekghadge
0 votes
7 replies
2.2K views
Can I assemble chloroplast genome of plants using SRA data from NCBI and I can publish it ?
chloroplast genome sra
updated by Istvan Albert Istvan Albert • written by balajir24.smc • balajir24.smc
2 votes
1 reply
26K views
Herald: The Biostar Herald for Wednesday, May 29, 2024
herald
updated by LChart LChart • written by Biostar Biostar
0 votes
1 reply
2.0K views
enrichGO function produces NULL object
enrichgo
updated by bk11 • bk11 • written by rykers • rykers
0 votes
2 replies
937 views
Forum: How Can BioJobs Lab Effectively Attract Top Talent and Employers in the Biotech Industry?
biotech
updated by pairedttest • pairedttest • written by Darren • Darren
0 votes
1 reply
2.0K views
vg call vs vg surject
vg variation graphs
updated by glenn.hickey glenn.hickey • written by aliraza3119 • aliraza3119
1 vote
4 replies
4.5K views
How do I create a gff(3) file from a genebank file?
gff genebank
updated by Istvan Albert Istvan Albert • written by torkel.loman • torkel.loman
0 votes
0 replies
496 views
visualization of centromere
visualization centromere human
written by kidpopaye • kidpopaye
0 votes
1 reply
1.3K views
Job: Seeking remote internship in genomic analyses
ngs genomics variant-calling
written by SlowSD • SlowSD
2 votes
9 replies
2.7K views
VG view and VG chunk failed when using SequenceTubeMap
vg vgteam
written by gforg34 • gforg34
0 votes
2 replies
1.7K views
cannot conda install macs3 on linux
atac macs3
written by QX • QX
0 votes
6 replies
4.5K views
NCBI vs Ensembl - Ortholog genes Information
genomics orthologs ncbi ensembl
written by José • José
0 votes
2 replies
696 views
Chromosomal distribution of the trancscripts count
chrosome_location
updated by ATpoint ATpoint • written by Varsha • Varsha
0 votes
4 replies
1.3K views
How to Split FASTQ File by UMI Indices into Multiple Files
seqkit umi split fastq
updated by GenoMax GenoMax • written by LDT • LDT
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