This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
0 replies
672 views
Add gene expression boxplot from plotCounts to each row of oncoprint via ComplexHeatmap
r complexheatmap oncoprint
updated by Ram 4.5K • | written by bioinfo8 23
0 votes
1 reply
805 views
Hybrid ScRNA Seq genome (transcriptome
scrna 10x cellranger
updated by dsull 781 • | written by Kay 0
0 votes
1 reply
642 views
Fastqc: kmer-content failed
fastqc kmer
updated by Ram 4.5K • | written by Joseph 0
1 vote
5 replies
1.7K views
Home made clustering
r clustering
written by Bastien Hervé 680
1 vote
9 replies
4.2K views
How to solve Freebayes memory issue
ngs freebayes snp
written by anikcropscience 28
0 votes
3 replies
1.9K views
chIP-seq vs ATACseq analysis
atacseq
written by QX 9
0 votes
0 replies
795 views
How to calculate the P-distance in Heteroplasmy Analysis Using mtDNA PacBio Data: Tools and Procedures
pacbio heteroplasmy somatic-mutations mtdna
updated by Ram 4.5K • | written by hashim.rana11 4
0 votes
1 reply
945 views
Fastq files from control WGS X30 samples, Illumina Novaseq 6000
dna-seq wgs fastq
updated by Ram 4.5K • | written by damian.loska 2
1 vote
2 replies
1.1K views
cancer type prediction based on RNASeq gene expression data?
cancer rna-seq
updated by Ram 4.5K • | written by J.F.Jiang 93
0 votes
3 replies
1.0K views
Nextflow pipeline - GATK error
nextflow applybqsr gatk
updated by Pierre Lindenbaum 17K • | written by eesha28112001 0
0 votes
1 reply
1.7K views
invalid class “Assay” object issue from Seurat
seurat
updated by bk11 312 • | written by QX 9
1 vote
3 replies
1.9K views
conda-like env for R
r conda
updated by dthorbur 350 • | written by QX 9
2 votes
3 replies
1.4K views
r script for wgcna analysis
microarray wgcna
updated by andres.firrincieli 412 • | written by Ruchi 1
0 votes
3 replies
1.5K views
scRNA integration problem with cluster not being separated
seurat scrna
updated by QX 9 • | written by mnx0723 0
0 votes
0 replies
486 views
Conservation score calculation
conservation-score
written by Varsha 0
1 vote
4 replies
1.6K views
Basic question about lncRNA identification
lncrna
written by ZZOYEA 2
0 votes
3 replies
1.3K views
Can I go from kallisto results to SEURAT directly
cell bustoolls kallisto single
updated by dsull 781 • | written by biotrekker 11
0 votes
5 replies
1.6K views
How to know protomter position in the chromosome?
atac-seq
updated by rfran010 174 • | written by sunyeping 11
1 vote
4 replies
2.6K views
Need to create a small artificial SRA file for unit testing
sequencing sequence
written by Sean McCorkle 2
0 votes
4 replies
1.6K views
Normalization of samples with very different transcriptomic profiles
deseq2 normalization rna-seq edger dge
updated by ATpoint 9.1K • | written by paulanavarrete116 0
0 votes
4 replies
1.6K views
Test custom signature using GSEA in scRNA-seq
scrna-seq seurat gsea
written by bio_info 2
0 votes
2 replies
1.1K views
Question about protein-peptide docking
active-site docking
updated by Mensur Dlakic 3.0K • | written by Acervo 0
0 votes
6 replies
3.1K views
SortmeRNA command of the latest version does not work
metatranscriptomics sortmerna
updated by Ram 4.5K • | written by eimanpharmacist 2
0 votes
0 replies
715 views
Genome mapping mm39 via GTK (BaseRecalibration) - Where to get known sites of polymorphisms?
mm39
written by Rashid 0
0 votes
0 replies
738 views
Value of short kmer lengths with 300PE sequencing
metagenomics sequencing spades microbiome
written by Bryan 2
0 votes
0 replies
750 views
News: Online course: Reproducibility Data Analysis with R, from 28-31 October
r git quarto reproducibility docker
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
3 replies
881 views
Bcftools consensus unexpected output
bcftools
updated by Ram 4.5K • | written by selplat21 2
0 votes
8 replies
2.4K views
Is it Possible to "Merge" data from Replicates within a VCF SNP File
snp vcf genomics plink
updated by Ram 4.5K • | written by ajbarrett98 0
0 votes
3 replies
1.2K views
Genomic coordinates in the BioNano VCF
bionano vcf smap optical_genome_mapping
updated by cmdcolin 448 • | written by avigail.shnaider 0
0 votes
3 replies
1.8K views
Filtering VCF files based on VAF giving incorrect results
gatk picard vcf bcftools
updated by Pierre Lindenbaum 17K • | written by Arton 2
0 votes
0 replies
509 views
Genetic DIversity Of Macrolide-Resistant Shigella species
comparative-genomics prokka
updated by Ram 4.5K • | written by eduardooseigyimah 0
2 votes
2 replies
1.9K views
Non-symmetric shrinkage with apeglm?
rna-seq deseq2 apeglm
updated by Ram 4.5K • | written by CJP-OHRI 3
0 votes
6 replies
2.2K views
I am trying to get my head around amplicon sequencing library prep but can't understand how the adapters are attached
library-preparation illumina amplicon
updated by Ram 4.5K • | written by ScottDansk 3
0 votes
0 replies
614 views
Paired snATACseq and snRNAseq over multiple tissues - best approaches
signac archr seurat atacseq
written by matt.a.bennett25890 3
0 votes
7 replies
2.4K views
How do I update the gene names of TCGA data correctly?
hgnc tcga
updated by Zhenyu Zhang 130 • | written by Ivana 0
0 votes
1 reply
1.6K views
Atac seq Annotation
atac-seq signac seurat
updated by ATpoint 9.1K • | written by yau 0
1 vote
1 reply
791 views
Correct pvalue threshold for a GWAS analysis on mitochondrial variants with PLINK2
mitochondria gwas p-value plink2
updated by Ram 4.5K • | written by biofather 1
0 votes
0 replies
496 views
MToolBox: cat: test.lst: No such file or directory
mtoolbox
updated by Ram 4.5K • | written by Stavroula 0
0 votes
1 reply
910 views
Query regarding single cell rna seq annotation using marker genes
scrna-seq
updated by Ram 4.5K • | written by TNF_alpha 0
0 votes
1 reply
2.1K views
Building a mappability mask with SNPable
snpable mappability samtools
updated by oviscandensis 0 • | written by biostars 1
0 votes
8 replies
2.2K views
BAM File Quality Sequences Are "?" and File Size is Very Small After STAR Alignment
bam fastq gene-expression rna-seq
updated by Ram 4.5K • | written by Tommmm 0
0 votes
1 reply
1.1K views
Bismark Methylation calling
bismark methylation wgbs
updated by Ram 4.5K • | written by Keem Uarren Eiryll 1
0 votes
4 replies
1.3K views
Differential gene expression
differential-gene-expression
written by goyal.shiwali 2
0 votes
0 replies
567 views
Why Does Metalign Relative Abundance Change?
metagenomics metalign
written by echolley 2
4 votes
0 replies
26K views
Herald: The Biostar Herald for Wednesday, June 05, 2024
herald
written by Biostar 380
1 vote
5 replies
1.5K views
Failure in inner_join
dplyr r
updated by zx8754 1.2K • | written by egascon 6
0 votes
2 replies
1.0K views
Please Help Me Understand GWAS Results
rmvp gwas gapit
written by chloek88 0
0 votes
3 replies
1.8K views
Could not parse a VCF file when using bcftools annotate
bcftools
updated by Ram 4.5K • | written by ManuelDB 11
0 votes
1 reply
2.0K views
Changing gap open and extension penalties in muscle (or any other command line tool that works on mac, really)
multiple-sequence-alignment
updated by erikatatianacs 0 • | written by sodiumnitrate 2
2 votes
8 replies
8.2K views
Different bigwig file sizes between BedgraphToBigwig and bamCoverage
ucsc bigwig bedgraphtobigwig bamcoverage deeptools
updated by QX 9 • | written by m98 45
Recent Votes
Recent Locations
Recent Replies