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Fastq files from control WGS X30 samples, Illumina Novaseq 6000

Hi, do you know where I can find some public control data having these features:

  • Illumina Novaseq 6000
  • pair-end (150nt)
  • covarege X30
  • WGS

I've searched in SRA and ENA but I couldn't find any sutiable results.

I'd like to test my pipeline on WGS data.

dna-seq wgs fastq
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updated by Ram Ram • written by damian.loska • damian.loska

1 answer

Only place where this data may be available is in Illumina Basespace. Have you looked there?

If you don't need to have NovaSeq 6000 as a requirement then GIAB datasets will fit the bill: https://github.com/genome-in-a-bottle/giab_data_indexes

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written by GenoMax GenoMax

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