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0 votes
5 replies
3.3K views
Error in converting bed file to interval using Picard
wes exome bedtointervallist picard agilent
updated by Ram 4.5K • | written by Assa Yeroslaviz 197
0 votes
0 replies
1.1K views
maftools oncoplot top bar barplots - any way to customize this plot further with color aesthetics or cutoff lines?
maf maftools oncoplot exome
updated by Ram 4.5K • | written by acererak 1
0 votes
4 replies
1.1K views
Help with CNA analysis using control-FREEC
cna control-freec
written by sainavyav22 0
0 votes
2 replies
1.0K views
Access to Giraffe sequence data
nature giraffe data-access
updated by Ram 4.5K • | written by Hansen_869 8
0 votes
1 reply
705 views
Best kit for PacBio HiFi Sequencing preperation
pacbio-sequencing pacbio-hifi hmw-gdna
updated by Ram 4.5K • | written by Human 0
0 votes
1 reply
1.3K views
Diffbind fold values and parameter Fold in DBA.report function
deseq2 atac-seq dba.report diffbind
written by Manko47 1
0 votes
2 replies
1.1K views
Conservation scores at each location of few motifs in MSA
conservation-scores fasta msa
written by wannabio 0
0 votes
1 reply
1.1K views
How lambda parameter works in BLAST?
lambda blast
updated by biofalconch 132 • | written by jqg44605 0
1 vote
3 replies
2.7K views
GSEA with fgsea package and using stat from DESeq2 output - what to do with NA padj values?
rna-seq deseq2 gsea
written by Fossil 3
0 votes
1 reply
1.1K views
Editing seurat object metatdata
seurat metadata scrna-seq
updated by Nat.Nataren 10 • | written by Happiness 0
7 votes
1 reply
1.9K views
Tutorial: How to organize a computational biology project
file-organization
updated by Mensur Dlakic 3.0K • | written by Ming Tommy Tang 469
1 vote
1 reply
1.0K views
Why the UK biobank switch off the data download facilities?
ukb
updated by Sina 0 • | written by baimudan 1
0 votes
2 replies
1.1K views
How to download BLCA.focal_score_by_genes.txt from GDC
gdc
updated by Zhenyu Zhang 130 • | written by GAOY6429 0
1 vote
3 replies
1.3K views
Maximum bits in ggseqlogo is less then 2?
ggseqlogo
updated by bk11 312 • | written by Mattan 1
0 votes
4 replies
1.6K views
Construction of a phylogentic tree for thousands of bacterial genomes
phylogenomics
updated by Mensur Dlakic 3.0K • | written by biobiu 15
0 votes
2 replies
829 views
Adding a simple tag to VCF Info column
vcf
updated by Ram 4.5K • | written by avelarbio46 3
0 votes
1 reply
1.0K views
Automated methods for comparing trees
distance agglomerative compare tree
updated by Mensur Dlakic 3.0K • | written by Alex Reynolds 3.6K
0 votes
3 replies
1.0K views
Pdb file isn't opening in the Desmond
simulation md
written by 20212854117sakib 0
0 votes
4 replies
1.4K views
Bulk converting superseded TCGA UUIDs
r tcgautils tcga
updated by Zhenyu Zhang 130 • | written by loughrae 9
0 votes
1 reply
698 views
Are bam2fastq --no-aligned and samtools fastq -f 4 same?
samtools assembly spades fastq
updated by Pierre Lindenbaum 17K • | written by Yogesh 0
0 votes
2 replies
3.1K views
Seurat object with multiple PCAs/UMAPs from different assays
r seurat
updated by bk11 312 • | written by solo.albif 0
0 votes
2 replies
1.1K views
How to find column names for ENCODE ATAC-seq data?
encode atac-seq bed
updated by Ming Tommy Tang 469 • | written by DN99 2
0 votes
2 replies
1.7K views
miRNAs pathway analysis
pathway mirna
updated by Daniel 0 • | written by zizigolu 438
7 votes
0 replies
771 views
Tool: GeneScape: A Python package for gene ontology visualization
ontology go
written by Istvan Albert 10K
3 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, June 10, 2024
herald
written by Biostar 380
0 votes
1 reply
1.2K views
Automated my docking results by using script
receptor-ligand-interaction dsv vina
updated by Ram 4.5K • | written by iamsmor 0
0 votes
4 replies
1.4K views
gene expression design
r gene-expression rna-seq
written by bioinfo1994 2
0 votes
4 replies
1.6K views
QC Analysis from Sanger sequencing
qc ab1 sanger
written by davidmaimoun 6
0 votes
1 reply
1.1K views
How to calculate the Genetic Distance (P-Distance) by using mtDNA pacBio data?
pacbio genetic-distance mtdna
written by hashim.rana11 4
0 votes
3 replies
1.4K views
bash for merging bam files by samtools
samtools
updated by GenoMax 16K • | written by QX 9
0 votes
1 reply
1.1K views
Extremely high variance of coverage for metagenomic sample (variance-to-mean ratio ~2.5)
metabat metagenome coverage
written by k-tarasov 1
0 votes
2 replies
4.0K views
blastn_vdb "- Error opening the following db(s): "
sra sra-toolkit blast blastn_vdb wgs
updated by cduvallet 0 • | written by musta1234 3
1 vote
0 replies
1.5K views
Tutorial: SingleCellExperiment object explained with a real-world example
bioconductor scrna-seq single-cell
updated by Ram 4.5K • | written by Ming Tommy Tang 469
0 votes
2 replies
1.6K views
deeptools Compute reference-point and scale-regions
deeptools computematrix plotprofile
written by RD 3
0 votes
3 replies
1.4K views
Clusters in Differential Gene Expression Data
gdc gene-expression seurat
updated by Zhenyu Zhang 130 • | written by Scofield 0
0 votes
1 reply
809 views
Exon count and GC content
exon-count gc-content
updated by Pierre Lindenbaum 17K • | written by Varsha 0
0 votes
4 replies
1.6K views
Making heatmaps of ATACseq annotation data in R?
atac-seq rstudio
updated by rfran010 174 • | written by Ronin 1
0 votes
2 replies
1.1K views
What does the name of a read mean? How to find its location in genome viewer?
ukb reads
updated by Pierre Lindenbaum 17K • | written by sacryt 0
0 votes
3 replies
1.5K views
Detecting a virus in RNA-Seq Data
fastq-screen rna-seq kraken2
updated by rfran010 174 • | written by bioinfo1994 2
0 votes
2 replies
1.1K views
finding housekeeping genes and small RNA sequences of Arabidopsis thaliana
housekeeping-genes rna
written by Bushra Bibi 8
0 votes
2 replies
1.2K views
getting RNA-seq raw counts from Kallisto
counts raw rna-seq kallisto
written by Meghan.T 1
0 votes
1 reply
1.2K views
What database to use for GATK baseRecalibration when using the ensembl hg19 genome
ensembl gatk
updated by GenoMax 16K • | written by ramiro.barrantes 6
0 votes
1 reply
1.0K views
Design model matrix with limma with cell different proportions estimates and batch effect
r limma deconvolution rna-seq
updated by Gordon Smyth 916 • | written by ij283 0
0 votes
1 reply
789 views
Looking for a scientific source talking about the functionality of CONCOCT and MetaBAT
sources concoct assembly metabat
updated by Jess 6 • | written by marie.harmel 1
0 votes
19 replies
3.6K views
Rstudio hangs on logisic regression using generalized estimating equations (geepack::geese())
geepack
written by jonas.andersson 5
0 votes
6 replies
2.5K views
Network analysis of TCGA and GTEx gene expression datasets
r gtex studio tcga
updated by marco.barr 22 • | written by Nusrat 0
0 votes
7 replies
2.0K views
fastq-dump not working in loop
fastq-dump
updated by Ram 4.5K • | written by Bushra Bibi 8
0 votes
5 replies
1.8K views
assemble extracted kmers into longer contigs/sequences
assembly unique kmers
written by sapuizait 1
0 votes
4 replies
2.0K views
Error: Trimmomatic Command not found
ngs illumina quality-control trimmomatic
updated by Ram 4.5K • | written by Tundup 1
0 votes
2 replies
1.2K views
single nucleus RNA seq processing pipeline questions
demultiplexing snrnaseq
written by biotrekker 11
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