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0 votes
3 replies
1.3K views
WoLFPSort Installation
wolfpsort
updated by dthorbur dthorbur • written by Patadu94 • Patadu94
0 votes
6 replies
1.6K views
Removing batch effect and doing differential gene expression analysis
rna-seq
updated by ATpoint ATpoint • written by sarahlee.bekaert • sarahlee.bekaert
0 votes
2 replies
1.4K views
Signac: RegionStats: Not all seqlevels present in supplied genome, trying to load regions beyond the boundaries of non-circular sequence "chr8"
seurat regionstats single-cell atac-seq signac
updated by GenoMax GenoMax • written by yau • yau
0 votes
1 reply
680 views
Comparing quality across samples in a VCF
vcf
updated by Ram Ram • written by ekirsch • ekirsch
0 votes
0 replies
640 views
miRNA prediction using mirMachine; what are the ways to study the functional significance of miRNAs?
annotation assembly mirmachine mirna
written by Vijith • Vijith
0 votes
7 replies
1.5K views
FASTQ header correction to remove .1 and .2 from paired end - SRA files
fastq
updated by noodle noodle • written by genomics_buddy • genomics_buddy
0 votes
9 replies
6.3K views
collapsePathways function throwing error
gsea fgsea r
updated by txema.heredia • txema.heredia • written by Pac314 • Pac314
0 votes
0 replies
600 views
Creation of appropriate model matricies for Surrogate Variable Analysis (SVA)
normalization rna-seq sva microarray
written by qile0317 • qile0317
0 votes
2 replies
1.1K views
Exome sequencing dataset for SKAT
skat vep exome-sequencing
written by aurina.arnatk • aurina.arnatk
1 vote
0 replies
814 views
How to summarize dbCAN3 results
dbcan cazy cazyme dbcan3 dbcan2
updated by Diego • Diego • written by Nishat • Nishat
0 votes
13 replies
3.8K views
DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts in whole blood: is it normal to always get NS?
deg limma rstudio
updated by GenoMax GenoMax • written by egascon • egascon
0 votes
3 replies
1.0K views
Mismatch between number of reads in fastq and mapped reads
samtools bam
updated by samuel.a.odonnell samuel.a.odonnell • written by shpak.max • shpak.max
0 votes
1 reply
905 views
Help Needed for Submitting Multiple Sequences to ENA
ena database metagenomic
updated by GenoMax GenoMax • written by Lucas • Lucas
0 votes
1 reply
609 views
gene annotation for mapman
mapman affymatrix annotation
updated by GenoMax GenoMax • written by hellokwmin • hellokwmin
1 vote
3 replies
2.0K views
Changing barplot color on enrichment-based data
ggplot2
updated by GenoMax GenoMax • written by Gerard • Gerard
0 votes
2 replies
1.1K views
Bias in FDR distribution
deg distribution p-value limma
written by Daniel • Daniel
6 votes
5 replies
3.9K views
Tool: SEDA (SEquence DAtaset builder): a desktop tool for processing FASTA files containing DNA and protein sequences
fasta sequences java
written by Hugo Hugo
0 votes
1 reply
950 views
vg view and vg surject both crashing after running giraffe
surject view extract giraffe vg
updated by Ram Ram • written by Jen • Jen
0 votes
2 replies
3.6K views
Trimming adapters and primer on ONT nanopore sequencing
trimming 16s nanopore
written by l.gallucci • l.gallucci
0 votes
0 replies
562 views
Looking to understand my Chi-squared results from a Pool-seq/ATAC-seq analysis
atac-seq pool-seq
written by Ronin • Ronin
0 votes
4 replies
1.8K views
VG autoindexing error: Chromosome path not found in graph or haplotypes
vg vgteam
written by l.dammer • l.dammer
0 votes
2 replies
912 views
Sequece Raw Data QC A/T.G.C Distribution
illumina sequencing fastqc
updated by GenoMax GenoMax • written by SomeOne • SomeOne
0 votes
8 replies
1.9K views
Are there instutions that allow to use their hpc without charge?
16s hpc nanopore
updated by a.alnawfal.1992 a.alnawfal.1992 • written by kerianaleerivera • kerianaleerivera
0 votes
1 reply
1.3K views
What is the best CNV caller for trio families WES data?
trio autosomal wes families cnv
updated by Samuel • Samuel • written by fkm.022 • fkm.022
0 votes
4 replies
1.1K views
Best Kits for RNA extraction from different fish tissue for annotation and gene expression analysis
gene-expression kits annotation rna-extraction rna_sequencing
updated by dsull dsull • written by Human • Human
2 votes
2 replies
2.1K views
Job: Exciting 2024 Summer Internship Opportunity in Translational Genetics Arrowhead Pharmaceuticals!
intern
written by Shicheng Guo Shicheng Guo
4 votes
7 replies
23K views
How to download dbSNP153 vcf files in hg19/GRCH37 version
dbsnp153 vcf
updated by bounlu bounlu • written by Shicheng Guo Shicheng Guo
0 votes
4 replies
1.4K views
Is there a common acceptance criteria for sample contamination?
contamination
updated by jared.andrews07 jared.andrews07 • written by CY CY
0 votes
1 reply
774 views
Forum: Are bacterial 16s paralogs real, and do they bias microbiome analyses conducted with QIIME2?
qiime paralog microbiome bias 16s
written by evozoa • evozoa
0 votes
1 reply
1.4K views
How to compute gsea overlap of gene set with R
gsea overlap
updated by Nat.Nataren • Nat.Nataren • written by Picasa Picasa
0 votes
1 reply
1.4K views
Vg Call error multiple paths detected using HPRC-GRCH38 ref
hprc call vg grch38
updated by Jordan M Eizenga • Jordan M Eizenga • written by Alexandria A. • Alexandria A.
0 votes
2 replies
1.1K views
Go from protein mutation back to gene mutation
mutations tools
updated by GenoMax GenoMax • written by nhaus • nhaus
0 votes
0 replies
598 views
News: Conservation Genomics course
snps populationgenomics conservationgenomics inbreeding
written by Physalia-courses Physalia-courses
0 votes
4 replies
1.3K views
Why is it often necessary to perform z-transformation on quantitative data when doing GWAS?
gwas
written by Isaac • Isaac
0 votes
2 replies
943 views
SCPA analysis with all qvals = 0
scrna-seq scpa seurat
written by bio_info • bio_info
0 votes
5 replies
1.4K views
how to confirm that a particular plant gene shows resistance to insects through bioinformatics
insects resistance gene
updated by dthorbur dthorbur • written by Bushra Bibi Bushra Bibi
0 votes
2 replies
1.5K views
Surpsrisingly short reads in illumina 1.9 Miseq runs (2X300)
ngs
written by Mohamed Samir • Mohamed Samir
0 votes
3 replies
1.1K views
Odd output format for bcftools isec
bcftools vcf intersection
written by Begonia_pavonina • Begonia_pavonina
0 votes
5 replies
2.5K views
Combining VG graphs
vg
updated by LauferVA LauferVA • written by AshleeThomson • AshleeThomson
1 vote
3 replies
1.4K views
Where can I download human VCF files?
ngs variant vcf filtering variants
updated by Michael Dondrup Michael Dondrup • written by majd.abdulghani • majd.abdulghani
1 vote
2 replies
1.4K views
Does it make sense to use scRNAseq for this experiment?
scrna-seq
written by Mark • Mark
0 votes
3 replies
1.3K views
I got qlen = 276 using bam_cigar2qlen in htslib but I count that cigar by myself, it should be 263.
bam cigar htslib
written by Aaron • Aaron
0 votes
1 reply
845 views
Trimming from 151bp to 65bp
sequencing data
updated by GenoMax GenoMax • written by QX • QX
0 votes
0 replies
596 views
Indexing individual nucleotides across genome with NumPy-compatible output
nucleotide array genome numpy indexing
written by Michael Gruenstaeudl • Michael Gruenstaeudl
0 votes
5 replies
1.5K views
Retrive amino acids sequences from NCBI E-Direct
e-direct
written by Patadu94 • Patadu94
0 votes
6 replies
2.4K views
Forum: How do you make an original contribution to knowledge in applied bioinformatics?
thesis academia phd
written by Edna • Edna
0 votes
0 replies
642 views
Adapter contamination trimming using Cutadapt
ngs data preprocessing
written by citronxu • citronxu
0 votes
3 replies
1.0K views
interpreting hisat2 alignment summary from paired end reads
hisat2 summary
written by Bushra Bibi Bushra Bibi
0 votes
0 replies
420 views
mSVM for detecting hub genes
clustring smv hub_genes
written by Morteza • Morteza
0 votes
6 replies
1.7K views
RNA Seq Paired End High Duplication Rate
fastqc rna-seq fastq
updated by GenoMax GenoMax • written by Tara • Tara
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