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0 votes
2 replies
1.8K views
how to see Pacbio reads in IGV
pbmm2 pbindex pacbio long-reads revio
updated by Pierre Lindenbaum 17K • | written by María José 1
1 vote
1 reply
1.1K views
TensorQTL Mapping - permutation p values for all associations
permutation tensorqtl
written by Paula 1
0 votes
3 replies
1.1K views
How to do preprocessing from fastqc
fastqc scrna-seq single-cell
updated by Ram 4.5K • | written by Lulu 0
2 votes
2 replies
1.2K views
Trying to use equivalence test from a diffbind dataset
diffbind r deseq2 chip-seq atac-seq
updated by ATpoint 9.1K • | written by jandrade 2
0 votes
2 replies
2.0K views
Consistent cluster coloring
r seurat
written by solo.albif 0
0 votes
3 replies
2.9K views
Slot to pull data from for DoHeatmap
deseq2 doheatmap seurat pseudobulk
updated by Ming Tommy Tang 469 • | written by bio_info 2
0 votes
0 replies
824 views
News: online course on Adaptation Genomics
structural-variants population-genomics adaptation-genomics
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
3 replies
3.7K views
Is it possible to modify the gene names from the x-axis in Seurat::Dotplot?
seurat scrna-seq single-cell dotplot
updated by Ram 4.5K • | written by ev97 4
0 votes
0 replies
783 views
Setting the size for finding motifs using homer
motif homer
written by gogeni5529 9
4 votes
13 replies
9.7K views
Centrimo error: Template does not contain data section
chip-seq meme
updated by Johan Zicola 8 • | written by Matus 7
0 votes
2 replies
1.3K views
Finding DEGs of cell type comprising of more than one clusters
deg findallmarkers scrna-seq single-cell
updated by Ram 4.5K • | written by TNF_alpha 0
0 votes
0 replies
607 views
Clustering a rare variant on the GDA array
array gda clustering rare-variant genome-studio
updated by Ram 4.5K • | written by panacotaforcota 0
0 votes
3 replies
2.0K views
PCR duplicate removal in single-end atac-seq data
atac-seq pcr-duplicate
updated by ATpoint 9.1K • | written by sarahmanderni 13
0 votes
6 replies
2.2K views
METAL ERROR: The command you issued could not be processed ...
meta-analysis metal gwas
written by JJ 0
0 votes
1 reply
1.1K views
dbSNP download and merge to my data
snp gwas dbsnp
updated by GenoMax 16K • | written by SeoG 1
1 vote
2 replies
1.4K views
NGS Data Analysis
ngs genome sequencing
updated by a.alnawfal.1992 38 • | written by Bindiya 1
0 votes
1 reply
1.1K views
Annotating Pathways in a network
pathways cytoscape network
updated by Scooter 31 • | written by SKY 6
0 votes
2 replies
1.1K views
Enrichment Analysis of Pathways
enrichment-analysis cytoscape
updated by Scooter 31 • | written by SKY 6
0 votes
7 replies
3.1K views
Salmon ~ Effective Length
salmon
updated by Rob 747 • | written by chrisk 0
0 votes
5 replies
2.2K views
MAKER2 no FASTAs generated
maker fasta fasta_merge genome annotation
updated by Kinoppy 0 • | written by jamie.pike 9
0 votes
1 reply
739 views
vg giraffe, accept admixed single and paired reads as input
vg
updated by Jordan M Eizenga 78 • | written by Thomas 0
0 votes
0 replies
479 views
vg search for all specific kmer/motif (e.g., RE site) occurrences in pangenome graph
vg
written by Thomas 0
1 vote
2 replies
1.5K views
Phasing human samples with Shapeit4
phasing shapeit shapeit4
written by Private 1
0 votes
4 replies
1.3K views
In silico PCR - multiple Primers and multiple sequences at the same time
pcr
updated by Ram 4.5K • | written by sulichkarolina 0
0 votes
2 replies
989 views
scaling for kallisto estimate counts
differential-gene-expression rnalysis kallisto
written by Meghan.T 1
0 votes
3 replies
2.8K views
Submitting to GEO: 10x Fixed RNA profiling (Single Cell Gene Expression Flex)
rna-seq
updated by matthewsmith 1 • | written by psm 18
0 votes
0 replies
1.6K views
Tutorial: DiffBind run parallel
chip-seq atac-seq diffbind
updated by ATpoint 9.1K • | written by Juan 0
0 votes
1 reply
1.5K views
MGI DNBelab C Series High-throughput Single-cell RNA Library Preparation Set V3.0, Seurat
rna-seq seurat single-cell mgi
updated by bk11 312 • | written by yau 0
0 votes
7 replies
2.2K views
Looking for clarification of .vcf output from variant calling
freebayes vcf variant-calling
updated by Ram 4.5K • | written by Jess 6
0 votes
0 replies
769 views
KEGG pathways analysis (ko and map IDs)
ko kegg pathway map
updated by GenoMax 16K • | written by manekineko 1
0 votes
4 replies
1.8K views
circlize R package to plot ecDNA
ecdna plot circlize
updated by trausch 202 • | written by a.loka92 0
0 votes
2 replies
1.1K views
Determining biological relevance of a list of motifs?
motifs homer
written by Ronin 1
0 votes
4 replies
1.5K views
Is using the assembled transcript in one de novo assembler as reference/trusted contigs for the second assembler logical?
trinity rna-seq rnaspades
updated by GenoMax 16K • | written by RCMC 1
0 votes
6 replies
2.4K views
Best way to create a custom reference for CellRanger when using a transgenic mouse strain expressing a human protein.
cellranger
updated by ATpoint 9.1K • | written by Alx 0
0 votes
0 replies
548 views
RMSD vs SDM (structural distance)
rmsd
written by Coralie 0
1 vote
2 replies
1.1K views
cluster annotation in single-cell (-nuclei) RNA-Seq or multiome experiments
celldex annotation singler scrnaseq clustering
written by gogeni5529 9
0 votes
2 replies
1.7K views
Speed of Cell-Cell interaction analysis on scRNA-seq data
cellchat scrna-seq seurat
updated by gglim 22 • | written by Song 1
0 votes
0 replies
601 views
Overrepresentation analysis for fractions
overrepresentation
written by malonzm1 2
1 vote
1 reply
2.2K views
Uniprot SPARQL: InterPro domain positions
sparql
updated by me 76 • | written by fabian.grammes 1
0 votes
12 replies
3.5K views
blast Segmentation fault
blastn fasta local-blast
updated by Ram 4.5K • | written by giulia.cosenza 2
0 votes
2 replies
2.1K views
Ubuntu 24.04 for Oxford Nanopore Mk1B
ubuntu installation software
written by Calvin-Calvin 0
0 votes
5 replies
1.2K views
sam2tsv add in my path
sam2tsv
updated by Pierre Lindenbaum 17K • | written by harry 4
0 votes
3 replies
1.5K views
FastQC report
quality fastqc filtration
updated by a.alnawfal.1992 38 • | written by Bushra Bibi 8
0 votes
6 replies
1.8K views
Stuck on how to run STARsolo on paired cDNA RNA-Seq FASTQ files
starsolo fastq
written by Nicholas 2
0 votes
0 replies
563 views
PCa Biplot For RNA-Seq Study Samples With 1k Genome Reference Panel
ethnicity snp hapmap
written by ssankar3 0
0 votes
7 replies
12K views
Using bcftools to change ploidy level in vcf files
snp bcftools
updated by michael 2 • | written by flolil27 0
0 votes
0 replies
796 views
What is the reason for the requirement of at least 2 experiments for LFQ in MaxQuant?
maxquant spectrometry mass proteomics lfq
written by Riq 5
0 votes
1 reply
775 views
Regarding WGCNA
wgcna
updated by Ram 4.5K • | written by deepak 0
0 votes
6 replies
1.9K views
Why am I getting such a big difference in alignment rates in kallisto?
kallisto ensembl
written by bioinfo 19
2 votes
1 reply
3.1K views
Reading files from different types as H5AD
python scanpy anndata single-cell
updated by bk11 312 • | written by AlexStar 22
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