This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
3 replies
862 views
Bcftools consensus unexpected output
bcftools
updated by Ram Ram • written by selplat21 • selplat21
0 votes
8 replies
2.4K views
Is it Possible to "Merge" data from Replicates within a VCF SNP File
snp vcf genomics plink
updated by Ram Ram • written by ajbarrett98 • ajbarrett98
0 votes
3 replies
1.1K views
Genomic coordinates in the BioNano VCF
bionano vcf smap optical_genome_mapping
updated by cmdcolin cmdcolin • written by avigail.shnaider • avigail.shnaider
0 votes
3 replies
1.8K views
Filtering VCF files based on VAF giving incorrect results
gatk picard vcf bcftools
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Arton • Arton
0 votes
0 replies
498 views
Genetic DIversity Of Macrolide-Resistant Shigella species
comparative-genomics prokka
updated by Ram Ram • written by eduardooseigyimah • eduardooseigyimah
2 votes
2 replies
1.9K views
Non-symmetric shrinkage with apeglm?
rna-seq deseq2 apeglm
updated by Ram Ram • written by CJP-OHRI • CJP-OHRI
0 votes
6 replies
2.1K views
I am trying to get my head around amplicon sequencing library prep but can't understand how the adapters are attached
library-preparation illumina amplicon
updated by Ram Ram • written by ScottDansk • ScottDansk
0 votes
0 replies
596 views
Paired snATACseq and snRNAseq over multiple tissues - best approaches
signac archr seurat atacseq
written by matt.a.bennett25890 • matt.a.bennett25890
0 votes
7 replies
2.4K views
How do I update the gene names of TCGA data correctly?
hgnc tcga
updated by Zhenyu Zhang Zhenyu Zhang • written by Ivana • Ivana
0 votes
1 reply
1.6K views
Atac seq Annotation
atac-seq signac seurat
updated by ATpoint ATpoint • written by yau • yau
1 vote
1 reply
784 views
Correct pvalue threshold for a GWAS analysis on mitochondrial variants with PLINK2
mitochondria gwas p-value plink2
updated by Ram Ram • written by biofather • biofather
0 votes
0 replies
491 views
MToolBox: cat: test.lst: No such file or directory
mtoolbox
updated by Ram Ram • written by Stavroula • Stavroula
0 votes
1 reply
891 views
Query regarding single cell rna seq annotation using marker genes
scrna-seq
updated by Ram Ram • written by TNF_alpha • TNF_alpha
0 votes
1 reply
2.0K views
Building a mappability mask with SNPable
snpable mappability samtools
updated by oviscandensis • oviscandensis • written by biostars • biostars
0 votes
8 replies
2.2K views
BAM File Quality Sequences Are "?" and File Size is Very Small After STAR Alignment
bam fastq gene-expression rna-seq
updated by Ram Ram • written by Tommmm • Tommmm
0 votes
1 reply
1.0K views
Bismark Methylation calling
bismark methylation wgbs
updated by Ram Ram • written by Keem Uarren Eiryll • Keem Uarren Eiryll
0 votes
4 replies
1.3K views
Differential gene expression
differential-gene-expression
written by goyal.shiwali • goyal.shiwali
0 votes
0 replies
560 views
Why Does Metalign Relative Abundance Change?
metagenomics metalign
written by echolley • echolley
4 votes
0 replies
26K views
Herald: The Biostar Herald for Wednesday, June 05, 2024
herald
written by Biostar Biostar
1 vote
5 replies
1.5K views
Failure in inner_join
dplyr r
updated by zx8754 zx8754 • written by egascon • egascon
0 votes
2 replies
1.0K views
Please Help Me Understand GWAS Results
rmvp gwas gapit
written by chloek88 • chloek88
0 votes
3 replies
1.8K views
Could not parse a VCF file when using bcftools annotate
bcftools
updated by Ram Ram • written by ManuelDB ManuelDB
0 votes
1 reply
2.0K views
Changing gap open and extension penalties in muscle (or any other command line tool that works on mac, really)
multiple-sequence-alignment
updated by erikatatianacs • erikatatianacs • written by sodiumnitrate • sodiumnitrate
2 votes
8 replies
8.2K views
Different bigwig file sizes between BedgraphToBigwig and bamCoverage
ucsc bigwig bedgraphtobigwig bamcoverage deeptools
updated by QX • QX • written by m98 m98
0 votes
0 replies
534 views
News: Course: Seafood Genomics
seafood foodtraceability nanopore genomics
written by Physalia-courses Physalia-courses
0 votes
0 replies
660 views
How to pre-process raw microarray data?
limma microarray wgcna
updated by GenoMax GenoMax • written by egascon • egascon
0 votes
1 reply
664 views
Mass spectrometry data analysis
proteome-discoverer
written by Bioinformatics_16 • Bioinformatics_16
0 votes
0 replies
411 views
ERROR with PRSKB
prskb vcf
updated by Ram Ram • written by stefania.morelli92 • stefania.morelli92
0 votes
0 replies
589 views
Subunit Annotation in Genome Scale Models
database engineering uniprot metabolic enzyme
written by shafiat.dewan • shafiat.dewan
0 votes
0 replies
535 views
CIBERSORTx PHP Fatal error
cibersortx php
written by JIWON KIM • JIWON KIM
0 votes
4 replies
1.1K views
Estimating haplotypes from sequencing reads
sequencing reads haplotypes
written by Arline • Arline
0 votes
7 replies
5.6K views
Ensembl IDs <-> Gene Symbols mapping -- Using org.Hs.eg.db, biomaRt or EnsDb.Hsapiens.v86?
org.hs.eg.db ensdb.hsapiens.v86 biomart ensembl
updated by tomas4482 • tomas4482 • written by DGTool • DGTool
0 votes
1 reply
598 views
full lenght gene amplification from RNA seq data
rnaseq offtopic
updated by GenoMax GenoMax • written by maryum • maryum
0 votes
4 replies
1.2K views
NCBI gene data
variants ncbi
written by chandrakala.m • chandrakala.m
0 votes
1 reply
646 views
Can I downsize ChIP-seq data for ChIP-ed samples
chip-seq downsize
updated by rfran010 • rfran010 • written by Insect_gmx • Insect_gmx
4 votes
5 replies
12K views
What Is The Meaning Of Snp Strand
snp mapping strand
updated by bounlu bounlu • written by Jonathan Hsu • Jonathan Hsu
0 votes
0 replies
749 views
I need to binary plink files of human genome reference build37, however, Im completely lost and have no idea from where to begin
bplinkfiles human genome plink
updated by GenoMax GenoMax • written by Marcos • Marcos
0 votes
0 replies
716 views
MrBayes 3.2.7a in mpi mode staying at stationary state from the beginning
mpi mrbayes stationary beagle library
written by ricfoz • ricfoz
0 votes
14 replies
3.4K views
Deseq2 , Limma - the paired test seems to be incorrect - is it known problem ?
deseq
updated by i.sudbery i.sudbery • written by Alexander • Alexander
0 votes
3 replies
1.6K views
Transcriptome analysis of virus infected plants and their controls
deg heatmap rna
updated by manaswwm manaswwm • written by diya • diya
0 votes
2 replies
2.3K views
Monocle3 Download error in R
rstudio monocle3
updated by GenoMax GenoMax • written by odi • odi
0 votes
3 replies
956 views
[bwa_idx_build] fail to open file 'bwtsw' : No such file or directory
bwa
updated by GenoMax GenoMax • written by efan18808 • efan18808
0 votes
0 replies
549 views
wilcoxon signed rank test
anova r mixed-model fixed-effect random-effect
updated by Ram Ram • written by Andy • Andy
0 votes
2 replies
2.6K views
How to download multiple fasta sequences and keep them organized by what genome they came from
blast sequences
written by ATS • ATS
0 votes
3 replies
784 views
After DimHeatmap no histogram values
r seurat dimheatmap
updated by Ram Ram • written by Sander • Sander
0 votes
2 replies
1.1K views
Add tags/ header lines to a vcf file
bcftools vcf
updated by GenoMax GenoMax • written by mahlet.teka • mahlet.teka
0 votes
0 replies
914 views
News: Introduction to GWAS (online course)
gwas imputation pipeline
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
2 replies
743 views
Making Changes to SequenceTubeMap
sequencetubemap vg
written by Mayank • Mayank
1 vote
0 replies
1.2K views
Job: [UK] Bioinformatics Programmer (Visa sponsored)
nextflow galaxy genomes bacterial metagenomics
written by µbinfie • µbinfie
0 votes
0 replies
501 views
Help finding 10x genomics single cell dataset along with VCF
single-cell variant-calling
updated by Ram Ram • written by debdeepto.m • debdeepto.m
Recent Votes
Recent Locations
Recent Replies