vg giraffe, accept admixed single and paired reads as input

Is it possible for vg giraffe to accept admixed single-end and paired-end reads together in a single input stream - similar to minimap2 or bwa smart pairing?

Thanks.

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updated 2.3 years ago by Jordan M Eizenga 78 • | written 2.3 years ago by Thomas 0

This is not currently implemented. They would have to be separated and mapped with two vg giraffe processes.

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written 2.3 years ago by Jordan M Eizenga 78

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