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0 votes
3 replies
1.4K views
picard – scatter intervals by n uses
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updated by Pierre Lindenbaum 17K • | written by Matteo Ungaro 16
0 votes
0 replies
621 views
Centrifuge Classifying Reads, but the Report is Empty
metagenomics centrifuge
updated by GenoMax 16K • | written by echolley 2
0 votes
3 replies
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Seeking Tutorial for Downloading TCGA Data with TCGAbiolinks and Converting to TPM
tpm tcga
updated by Ming Tommy Tang 469 • | written by Znow 2
0 votes
11 replies
9.2K views
How to download a file from zenodo link without leaving terminal?
axel linux curl wget
updated by GenoMax 16K • | written by SlowSD 0
0 votes
3 replies
1.2K views
how to measure significance of improvement between two methods during modeling
spearman correlation
updated by Jean-Karim Heriche 2.7K • | written by rheab1230 15
0 votes
1 reply
725 views
How to Predict Drug Targets Using Single-Sample RNA-Seq Data?
drug target rna-seq
updated by DGTool 30 • | written by Musab 0
0 votes
1 reply
730 views
Estimate large insertions size in WGS data.
ngs diagnostic sv wgs
updated by GenoMax 16K • | written by meetmet 1
0 votes
2 replies
1.0K views
.tar files Microarray
microarray
written by Nona 9
0 votes
4 replies
1.7K views
vg autoindex memory issues Signal 6 has occured
vg
updated by Jordan M Eizenga 78 • | written by l.dammer 0
0 votes
0 replies
462 views
SUPPA, Junctions Dealing
suppa junctions
written by smanzano250800 0
0 votes
3 replies
8.0K views
bcftools to remove non-variants sites
bcftools snp vcftools vcf filter
updated by zx8754 1.2K • | written by shiy05 3
0 votes
6 replies
1.4K views
Map genome to a particular region
mapping genome
updated by GenoMax 16K • | written by JohnOak 0
0 votes
1 reply
1.4K views
Why there are only two .fastq files in scATAC-seq raw data?
scatac-seq cellranger 10x
updated by Ram 4.5K • | written by 浩然 0
0 votes
3 replies
3.3K views
How to measure pairwise genetic distance in all samples of a VCF file
pop-gen pairwise-distance vcf
updated by hewm2008 5 • | written by LDT 34
0 votes
6 replies
2.1K views
Removing batch effect in time-series data
batch-effect
updated by Ram 4.5K • | written by Álvaro 0
0 votes
3 replies
1.7K views
Interproscan
configuration install interproscan exist not
updated by GenoMax 16K • | written by MaxMin 1
0 votes
8 replies
1.9K views
BCFtools not calling variant, despite adequate coverage
bcftools variant calling
updated by GenoMax 16K • | written by mpiersonsmela 2
0 votes
4 replies
1.9K views
New versions of the same transcripts ID may have different exons coordinates??
refseq
updated by i.sudbery 2.3K • | written by ManuelDB 11
0 votes
1 reply
770 views
How can I get the total list of RefSeq transcripts?
refseq
updated by GenoMax 16K • | written by ManuelDB 11
1 vote
13 replies
5.5K views
Failed to download data from EBI BioStudies with ascp/Aspera
aspera ebi
updated by Aster 0 • | written by biock 7
0 votes
1 reply
611 views
Problem in input data loading in Structure
structure-pritchard
updated by Mensur Dlakic 3.0K • | written by RN 0
0 votes
0 replies
602 views
running multiple GEO Dataset projects
geo
updated by Ram 4.5K • | written by Bushra Bibi 8
0 votes
0 replies
917 views
MEME PWM format - what is the meaning of nsites?
motif sequence meme-suite pwm meme
written by mcsimenc 3
0 votes
2 replies
2.1K views
Example human WGS fastq data
wgs
updated by Ming Tommy Tang 469 • | written by ramiro.barrantes 6
2 votes
0 replies
1.7K views
Tutorial: Seurat Object Explained: Beginner's Guide and Demo
scrna-seq seurat single-cell
updated by Ram 4.5K • | written by Ming Tommy Tang 469
0 votes
1 reply
1.4K views
Empty txt file as an output of "seqkit stats" for multiple fastq files
ngs linux
updated by shenwei356 870 • | written by Mohamed Samir 3
0 votes
4 replies
1.3K views
how linearize nucleotide lines in axt file
axt
updated by dariober 1.5K • | written by resug 4
0 votes
0 replies
584 views
How to Merge Single Chromosome Genomic Annotations
braker3 genome annotation
written by Kinoppy 0
3 votes
6 replies
4.3K views
Alignment tool for very short reads (25bp)
mapper aligner bwa alignment bowtie2
updated by Ming Tommy Tang 469 • | written by Anisur Rahman 8
0 votes
0 replies
1.5K views
Job: PhD-position in bioinformatics / computational biology (75% E13) at Ruhr-University Bochum
ngs aging epigenomics mole-rat omics
written by Arne.Sahm 0
0 votes
9 replies
2.6K views
Help aligning Nanopore Long Read RNA seqs
rna-seq long-read minimap2
updated by GenoMax 16K • | written by sewaw37819 0
0 votes
2 replies
1.2K views
Job: postdoc/master's position AI ML
python neuroscience machine-learning
updated by colindaven 844 • | written by sivan.kinreich 0
0 votes
4 replies
2.1K views
Is T2T genome a "alternate assembly"
t2t grch38 alternate_assembly ref_genome
updated by colindaven 844 • | written by Daniel 1
1 vote
2 replies
1.2K views
edgeR batch effect model matrix sanity check
r edger rna-seq batch-effect
written by kmyers2 9
0 votes
4 replies
1.4K views
minimap2 U to T conversion
minimap2
updated by GenoMax 16K • | written by kewoka9286 0
0 votes
13 replies
3.4K views
BBMap Excess Fold Coverage
bbmap
updated by GenoMax 16K • | written by shacon 0
0 votes
1 reply
917 views
Jellyfish docker image error with bam files
jellyfish docker kmers
updated by bhumm 20 • | written by enee 2
0 votes
4 replies
2.3K views
Overrepresented sequence in reverse read
fastqc genomics trimmomatic sequencing atac
written by Jaskaran Singh 0
0 votes
0 replies
473 views
Testing difference in median of clinical variabls in Rna-seq data
clinical-features rna-seq
updated by Ram 4.5K • | written by Znow 2
0 votes
1 reply
723 views
Split the fastqc file base on barcode
fastq
updated by GenoMax 16K • | written by QX 9
1 vote
7 replies
1.7K views
Illumina Raw Data Multiple Read FIles Discussion
novaseqx pairedend illumina fungus
written by SomeOne 33
2 votes
6 replies
4.3K views
Intuitive Graphical Interface for Executing nf-core Pipelines
gui genomics ngs
updated by Matthias Zepper 524 • | written by Nour-eddine 7
0 votes
0 replies
526 views
Removing inherent biomarker sensor signals from the actual sensor readings
python data noise
written by bluecipher 0
0 votes
2 replies
2.4K views
How to use topGO tool for enrichment analysis of non-model organisms
topgo
updated by wdlin 0 • | written by otieno43 4
0 votes
4 replies
1.8K views
RSEM getting TPM from STAR alignment
tpm star rnaseq rsem
written by Emily 2
0 votes
0 replies
570 views
Help : Run EVE for CAMK2A.
vep eve
written by Meto 0
1 vote
3 replies
1.1K views
Is TMM apropriated for Welch test between gender?
welch-test tmm
updated by Ram 4.5K • | written by Znow 2
0 votes
5 replies
1.5K views
SPAdes error when trying to specify options for path
spades
written by AINUR FATIN BINTI MAZRI 0
0 votes
1 reply
1.1K views
Poor alignment post-SortMeRNA (rRNA removal)
star rrna rnaseq sortmerna
updated by andres.firrincieli 412 • | written by Fossil 3
0 votes
1 reply
1.2K views
How to extract gene_counts_length_scaled matrix from either raw count matrix or SE object
recount3 salmon gtex tximport deseq2
updated by ATpoint 9.1K • | written by Aditya 0
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