Hi all, I've been trying to run Centrifuge for metagenomic analysis. It appears to be classifying reads, but when it comes to the output report, the report is empty. I have my code I'm using and the output files below. Please let me know what I am doing wrong/how to fix this? Thanks!

My input line:

centrifuge --threads 32 --met-stderr -x p+h+v -1 /sciclone/scr10/echolley/igem/myco_meta/fastqs/trimmed/M07CI1_val_1.fq.gz -2 /sciclone/scr10/echolley/igem/myco_meta/fastqs/trimmed/M07CI1_val_2.fq.gz -S test1 --report-file test1_report

Output:

52 [bora] head test1
readID  seqID   taxID   score   2ndBestScore    hitLength   queryLength numMatches
LH00260:52:2255MVLT4:5:1101:29736:1042  unclassified    0   0   0   0   70  1
LH00260:52:2255MVLT4:5:1101:30011:1042  unclassified    0   0   0   0   300 1
LH00260:52:2255MVLT4:5:1101:31127:1042  unclassified    0   0   0   0   246 1
LH00260:52:2255MVLT4:5:1101:32309:1042  unclassified    0   0   0   0   194 1
LH00260:52:2255MVLT4:5:1101:33231:1042  unclassified    0   0   0   0   300 1
LH00260:52:2255MVLT4:5:1101:33053:1042  unclassified    0   0   0   0   212 1
LH00260:52:2255MVLT4:5:1101:34688:1042  unclassified    0   0   0   0   254 1
LH00260:52:2255MVLT4:5:1101:35481:1042  unclassified    0   0   0   0   288 1
LH00260:52:2255MVLT4:5:1101:33345:1042  unclassified    0   0   0   0   218 1

Report:

53 [bora] head test1_report 
name    taxID   taxRank genomeSize  numReads    numUniqueReads  abundance