How can I get the total list of RefSeq transcripts?
I use homo_sapiens_vep_112_GRCh38.tar.gz for the annotation of my pipeline. I would like to have the total list of the RefSeq transcripts of this version to do some checking and version compatibility. How can I get this list? It may be so simple but I am not able to get it.
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Unless you are interested in specific RefSeq transcripts you may want to check you MANE project which provides cross-referenced transcripts (one per gene) that are present in NCBI as well as Ensembl. https://www.ncbi.nlm.nih.gov/refseq/MANE/