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VEP Variant Effect Predictor issue with RefSeq and Gene symbol

Hi,

I am having an issue getting gene symbol when using refseq transcripts : they are blank although the gene ID is correct. When using ensembl transcripts I do get the gene symbol but I need annotations on refseq transcripts.

I read on some forums that this could be because the API is not up to date but it is (version 81). However I only have the version of the API installed during the VariantEffectPredictor installation. Could this be the problem ?

Could someone help me get the gene symbol while using refseq annotations ?

Thanks
Manon

vep refseq

Hi

I have the same problem - I get no gene symbols. Anybody found a solution.

Martin

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