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0 votes
0 replies
1.6K views
Tutorial: DiffBind run parallel
chip-seq atac-seq diffbind
updated by ATpoint ATpoint • written by Juan • Juan
0 votes
1 reply
1.4K views
MGI DNBelab C Series High-throughput Single-cell RNA Library Preparation Set V3.0, Seurat
rna-seq seurat single-cell mgi
updated by bk11 • bk11 • written by yau • yau
0 votes
7 replies
2.2K views
Looking for clarification of .vcf output from variant calling
freebayes vcf variant-calling
updated by Ram Ram • written by Jess • Jess
0 votes
0 replies
762 views
KEGG pathways analysis (ko and map IDs)
ko kegg pathway map
updated by GenoMax GenoMax • written by manekineko • manekineko
0 votes
4 replies
1.7K views
circlize R package to plot ecDNA
ecdna plot circlize
updated by trausch trausch • written by a.loka92 • a.loka92
0 votes
2 replies
1.1K views
Determining biological relevance of a list of motifs?
motifs homer
written by Ronin • Ronin
0 votes
4 replies
1.5K views
Is using the assembled transcript in one de novo assembler as reference/trusted contigs for the second assembler logical?
trinity rna-seq rnaspades
updated by GenoMax GenoMax • written by RCMC • RCMC
0 votes
6 replies
2.4K views
Best way to create a custom reference for CellRanger when using a transgenic mouse strain expressing a human protein.
cellranger
updated by ATpoint ATpoint • written by Alx • Alx
0 votes
0 replies
544 views
RMSD vs SDM (structural distance)
rmsd
written by Coralie • Coralie
1 vote
2 replies
1.0K views
cluster annotation in single-cell (-nuclei) RNA-Seq or multiome experiments
celldex annotation singler scrnaseq clustering
written by gogeni5529 • gogeni5529
0 votes
2 replies
1.7K views
Speed of Cell-Cell interaction analysis on scRNA-seq data
cellchat scrna-seq seurat
updated by gglim • gglim • written by Song • Song
0 votes
0 replies
594 views
Overrepresentation analysis for fractions
overrepresentation
written by malonzm1 • malonzm1
1 vote
1 reply
2.2K views
Uniprot SPARQL: InterPro domain positions
sparql
updated by me me • written by fabian.grammes • fabian.grammes
0 votes
12 replies
3.5K views
blast Segmentation fault
blastn fasta local-blast
updated by Ram Ram • written by giulia.cosenza • giulia.cosenza
0 votes
2 replies
2.1K views
Ubuntu 24.04 for Oxford Nanopore Mk1B
ubuntu installation software
written by Calvin-Calvin • Calvin-Calvin
0 votes
5 replies
1.2K views
sam2tsv add in my path
sam2tsv
updated by Pierre Lindenbaum Pierre Lindenbaum • written by harry • harry
0 votes
3 replies
1.5K views
FastQC report
quality fastqc filtration
updated by a.alnawfal.1992 a.alnawfal.1992 • written by Bushra Bibi Bushra Bibi
0 votes
6 replies
1.8K views
Stuck on how to run STARsolo on paired cDNA RNA-Seq FASTQ files
starsolo fastq
written by Nicholas • Nicholas
0 votes
0 replies
555 views
PCa Biplot For RNA-Seq Study Samples With 1k Genome Reference Panel
ethnicity snp hapmap
written by ssankar3 • ssankar3
0 votes
7 replies
12K views
Using bcftools to change ploidy level in vcf files
snp bcftools
updated by michael • michael • written by flolil27 • flolil27
0 votes
0 replies
784 views
What is the reason for the requirement of at least 2 experiments for LFQ in MaxQuant?
maxquant spectrometry mass proteomics lfq
written by Riq • Riq
0 votes
1 reply
768 views
Regarding WGCNA
wgcna
updated by Ram Ram • written by deepak • deepak
0 votes
6 replies
1.9K views
Why am I getting such a big difference in alignment rates in kallisto?
kallisto ensembl
written by bioinfo • bioinfo
2 votes
1 reply
3.1K views
Reading files from different types as H5AD
python scanpy anndata single-cell
updated by bk11 • bk11 • written by AlexStar • AlexStar
0 votes
5 replies
3.3K views
Error in converting bed file to interval using Picard
wes exome bedtointervallist picard agilent
updated by Ram Ram • written by Assa Yeroslaviz Assa Yeroslaviz
0 votes
0 replies
1.1K views
maftools oncoplot top bar barplots - any way to customize this plot further with color aesthetics or cutoff lines?
maf maftools oncoplot exome
updated by Ram Ram • written by acererak • acererak
0 votes
4 replies
1.1K views
Help with CNA analysis using control-FREEC
cna control-freec
written by sainavyav22 • sainavyav22
0 votes
2 replies
1.0K views
Access to Giraffe sequence data
nature giraffe data-access
updated by Ram Ram • written by Hansen_869 • Hansen_869
0 votes
1 reply
693 views
Best kit for PacBio HiFi Sequencing preperation
pacbio-sequencing pacbio-hifi hmw-gdna
updated by Ram Ram • written by Human • Human
0 votes
1 reply
1.2K views
Diffbind fold values and parameter Fold in DBA.report function
deseq2 atac-seq dba.report diffbind
written by Manko47 • Manko47
0 votes
2 replies
1.0K views
Conservation scores at each location of few motifs in MSA
conservation-scores fasta msa
written by wannabio • wannabio
0 votes
1 reply
1.0K views
How lambda parameter works in BLAST?
lambda blast
updated by biofalconch biofalconch • written by jqg44605 • jqg44605
1 vote
3 replies
2.7K views
GSEA with fgsea package and using stat from DESeq2 output - what to do with NA padj values?
rna-seq deseq2 gsea
written by Fossil • Fossil
0 votes
1 reply
1.1K views
Editing seurat object metatdata
seurat metadata scrna-seq
updated by Nat.Nataren • Nat.Nataren • written by Happiness • Happiness
7 votes
1 reply
1.9K views
Tutorial: How to organize a computational biology project
file-organization
updated by Mensur Dlakic Mensur Dlakic • written by Ming Tommy Tang Ming Tommy Tang
1 vote
1 reply
998 views
Why the UK biobank switch off the data download facilities?
ukb
updated by Sina • Sina • written by baimudan • baimudan
0 votes
2 replies
1.1K views
How to download BLCA.focal_score_by_genes.txt from GDC
gdc
updated by Zhenyu Zhang Zhenyu Zhang • written by GAOY6429 • GAOY6429
1 vote
3 replies
1.3K views
Maximum bits in ggseqlogo is less then 2?
ggseqlogo
updated by bk11 • bk11 • written by Mattan • Mattan
0 votes
4 replies
1.6K views
Construction of a phylogentic tree for thousands of bacterial genomes
phylogenomics
updated by Mensur Dlakic Mensur Dlakic • written by biobiu biobiu
0 votes
2 replies
821 views
Adding a simple tag to VCF Info column
vcf
updated by Ram Ram • written by avelarbio46 • avelarbio46
0 votes
1 reply
1.0K views
Automated methods for comparing trees
distance agglomerative compare tree
updated by Mensur Dlakic Mensur Dlakic • written by Alex Reynolds Alex Reynolds
0 votes
3 replies
1.0K views
Pdb file isn't opening in the Desmond
simulation md
written by 20212854117sakib • 20212854117sakib
0 votes
4 replies
1.4K views
Bulk converting superseded TCGA UUIDs
r tcgautils tcga
updated by Zhenyu Zhang Zhenyu Zhang • written by loughrae loughrae
0 votes
1 reply
685 views
Are bam2fastq --no-aligned and samtools fastq -f 4 same?
samtools assembly spades fastq
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Yogesh • Yogesh
0 votes
2 replies
3.1K views
Seurat object with multiple PCAs/UMAPs from different assays
r seurat
updated by bk11 • bk11 • written by solo.albif • solo.albif
0 votes
2 replies
1.1K views
How to find column names for ENCODE ATAC-seq data?
encode atac-seq bed
updated by Ming Tommy Tang Ming Tommy Tang • written by DN99 • DN99
0 votes
2 replies
1.7K views
miRNAs pathway analysis
pathway mirna
updated by Daniel • Daniel • written by zizigolu zizigolu
7 votes
0 replies
760 views
Tool: GeneScape: A Python package for gene ontology visualization
ontology go
written by Istvan Albert Istvan Albert
3 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, June 10, 2024
herald
written by Biostar Biostar
0 votes
1 reply
1.2K views
Automated my docking results by using script
receptor-ligand-interaction dsv vina
updated by Ram Ram • written by iamsmor • iamsmor
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