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0 votes
0 replies
681 views
News: Online course: Conservation Genomics
snps populationgenomics conservationgenomics inbreeding
written by Physalia-courses 281
0 votes
0 replies
821 views
GenVisR to generate waterfall plot with clinical data: Waterfall plot is not annotating the clinical data
mutation genvisr waterfall-plot oncoplot r
updated by Ram 4.5K • | written by tanbiswas6 1
1 vote
1 reply
868 views
EviGENE and BUSCO
busco evigene
updated by Mensur Dlakic 3.0K • | written by momo 1
0 votes
4 replies
1.4K views
FDA approved Biomarker database access
fda database biomarker
written by ijarne 3
1 vote
3 replies
2.4K views
Am I getting TPM correct from tcga?
tpm tcgabiolinks tcga
updated by Ram 4.5K • | written by Znow 2
0 votes
1 reply
1.2K views
Generating Hits files for BlobTools
blobtools uniprot
updated by jtorre28 0 • | written by Takuma 2
0 votes
2 replies
993 views
genomics graphs in R
cnv
updated by bhumm 20 • | written by mimarcelape 0
0 votes
3 replies
1.3K views
VCFtools indels/SNP treatment
variants vcftools
updated by Jeremy Leipzig 2.3K • | written by draccident 0
0 votes
1 reply
914 views
Error in "Per Tile Sequence Quality"
illumina novaseqx genome-assembly fastqc
updated by Ram 4.5K • | written by SomeOne 33
0 votes
6 replies
4.4K views
convert csv to fasta format using python
python
updated by Ram 4.5K • | written by Abdellrhmanakl 0
0 votes
3 replies
1.1K views
Comparing two BAM files for variant calling
ngs variant bam
updated by GenoMax 16K • | written by Yogesh 0
0 votes
0 replies
575 views
Understanding the transcript version comparison in the ncbi webside
ncbi
written by ManuelDB 11
0 votes
7 replies
2.8K views
Super enhancers
enhancers
updated by Ram 4.5K • | written by Oburah 0
2 votes
4 replies
3.3K views
Saccharomyces cerevisiae - mapping against transcriptome
salmon transcriptome hisat2 featurecounts yeast
updated by tdsone 0 • | written by yeast_rnaseq 2
0 votes
0 replies
822 views
Tool: geneviewer - Gene Cluster Visualizations in R
r clusterplot genome arrowmaps microbial-genetics
written by n.s.j.vandervelden 9
0 votes
4 replies
1.9K views
Alternative gap introduced when comparing insertion/deletion results between minimap2 and STAR2
star insertion minimap2 alignment deletion
written by peterhuang319 0
1 vote
2 replies
1.1K views
Is it acceptable to combine RNA-seq datasets?
rna-seq data-mining
written by imraandixon 1
1 vote
4 replies
2.2K views
Statistical test to compare cell type proportions in scrnaseq data
compositional-analysis scrna-seq
written by sarahmanderni 13
0 votes
6 replies
2.0K views
Is there a way to quickly calculate the nodes' average coverage of variation graph from the read alignment file (.gam, .json) ?
vg
written by Wenhai 0
0 votes
2 replies
774 views
Are there any resources for converting large lists of non-model genes into human orthologs?
gene-ontology
written by Ronin 1
0 votes
1 reply
683 views
PCR design and genome build compatibility
pcr primer genome-build
updated by Ram 4.5K • | written by laith.moushib 0
1 vote
0 replies
1.4K views
Blog: Sequencing by Synthesis on the Illumina NovaSeqXTM Series
novaseqx
updated by GenoMax 16K • | written by Novogene 54
2 votes
1 reply
1.4K views
Job: Seeking remote internship/job
remote europe
updated by colindaven 844 • | written by giulia.cosenza 2
0 votes
4 replies
1.4K views
Fetch protein information of genes in a gene list
protein gene
updated by Ram 4.5K • | written by CTLong 14
0 votes
1 reply
2.5K views
Seurat Wrappers old version installation
seurat
written by Long 1
1 vote
7 replies
2.8K views
GG Sankey plot - plot that does not show any flow between columns
ggplot2 sankey-plot r go
updated by zx8754 1.2K • | written by ijarne 3
0 votes
7 replies
2.4K views
Download SRR by parallel and fastq dump with a weird problem
scrna-seq linux parallel
written by diqixiaoyaoer 2
1 vote
0 replies
657 views
Codon usage bias analysis when comparing RNA-seq and proteome
rna-seq proteome codon-usage-bias
written by predeus 212
0 votes
4 replies
1.4K views
Fold changes reversed - DESeq2
deseq2 rna-seq
updated by i.sudbery 2.3K • | written by robert.flynn.21 1
0 votes
1 reply
996 views
Genome Alignment of Zebrafish ATAC Seq Data
encode bowtie alignment zebrafish atac
updated by Jack Tierney 45 • | written by Jaskaran Singh 0
0 votes
5 replies
2.8K views
Extracting UMIs from NEXTFLEX Small RNA-Seq reads using UMI_tools
smallrnaseq umi nextflex umi_tools mirna
updated by i.sudbery 2.3K • | written by MH85 2
0 votes
0 replies
499 views
Cell fractions (from single cell) as variable in Cox Survival model
cox single-cell
updated by Ram 4.5K • | written by Nona 9
0 votes
1 reply
833 views
Obtaining OMA and HOG IDs
oma browser
updated by Adrian Altenhoff 116 • | written by gtzotzos 0
0 votes
1 reply
802 views
Enriched Bar Chart on Blast2go gives percentage more than 100%
blast2go
written by Mohamed Abderrahmane 2
0 votes
5 replies
1.5K views
Exonerate command in Ubuntu
pseudogene-pipeline exonerate pseudogenes
updated by Ram 4.5K • | written by subashini.fbtpb106 2
0 votes
0 replies
549 views
Whether the hifiasm (hic) will filter unitig during the process from unitig to contig
hifiasm
updated by GenoMax 16K • | written by 2782887377 0
0 votes
0 replies
485 views
Discover_pseudogenes pipeline - GITHUB
pseudogene-mining pseudogenes transcribed-pseudogenes
updated by Ram 4.5K • | written by subashini.fbtpb106 2
1 vote
2 replies
2.9K views
Moving labels in a volcano plot with ggplot2
ggplot2 volcano-plot
updated by Jeremy 94 • | written by robert.flynn.21 1
0 votes
7 replies
2.2K views
Obtaining rRNA and tRNA contaminant file for RiboSeq
ribo-seq silva rrna
written by Daniel 4
0 votes
4 replies
1.6K views
Filter VCF based on INFO column values in R
r vcf
updated by Michael Dondrup 5.6K • | written by Stavroula 0
0 votes
6 replies
2.4K views
Help with Biopython for Beginner
python orf fasta biopython
updated by naveennavinbeast 0 • | written by cput 0
0 votes
7 replies
1.9K views
Ribosomal RNA Depletion in silico
minimap rna-seq rrna nanopore
updated by GenoMax 16K • | written by CL 0
0 votes
5 replies
1.8K views
Bulk rna sequencing
rna-seq differential-expression
updated by Thomas Neff 1 • | written by Rosie 0
0 votes
0 replies
716 views
News: Online single-cell RNA-seq Analysis Course (Nov 4-8)
rnaseq bioconductor single-cell
written by Physalia-courses 281
0 votes
4 replies
1.5K views
Subset VCF to exon region but still get intron_variant annotation
ensembl vcf vep vcftools
updated by rfran010 174 • | written by tomas4482 43
1 vote
2 replies
1.3K views
Illumina runfolder structure
bcl runfolder illumina bcl2fastq novaseq
written by scsc185 8
0 votes
2 replies
1.0K views
Analysing CITE-seq data where only 4 samples are CITE-seq and rest 11 are scRNA-seq
cite-seq analysis seurat multi-omics single-cell
written by Sagrika 0
0 votes
3 replies
2.8K views
Creating GCT files
rnaseq gtex gct
updated by Ram 4.5K • | written by Misk 0
0 votes
1 reply
934 views
ChIP-seq SICER
sicer chipseq
updated by Ming Tommy Tang 469 • | written by sk_24 0
1 vote
4 replies
2.2K views
What path list should be used to surject GAM to GRCh38/CHM13 reference genome
vg
written by Hanc 1
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