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Whether the hifiasm (hic) will filter unitig during the process from unitig to contig

I used bwa mem to map hic data to p-utg files and did some filtering on the results. It was found that there were very few hic signals on some short unitigs. I know hifiasm is based on kmer to map hic data. So I would like to ask whether hifiasm will filter out unitig nodes with few hic signals in the process of generating conitg from unitig using hicOr do some filtering based on something like coverage.

hifiasm

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