This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
4 replies
1.3K views
how linearize nucleotide lines in axt file
axt
updated by dariober dariober • written by resug • resug
0 votes
0 replies
580 views
How to Merge Single Chromosome Genomic Annotations
braker3 genome annotation
written by Kinoppy • Kinoppy
3 votes
6 replies
4.3K views
Alignment tool for very short reads (25bp)
mapper aligner bwa alignment bowtie2
updated by Ming Tommy Tang Ming Tommy Tang • written by Anisur Rahman • Anisur Rahman
0 votes
0 replies
1.5K views
Job: PhD-position in bioinformatics / computational biology (75% E13) at Ruhr-University Bochum
ngs aging epigenomics mole-rat omics
written by Arne.Sahm • Arne.Sahm
0 votes
9 replies
2.6K views
Help aligning Nanopore Long Read RNA seqs
rna-seq long-read minimap2
updated by GenoMax GenoMax • written by sewaw37819 • sewaw37819
0 votes
2 replies
1.2K views
Job: postdoc/master's position AI ML
python neuroscience machine-learning
updated by colindaven colindaven • written by sivan.kinreich • sivan.kinreich
0 votes
4 replies
2.1K views
Is T2T genome a "alternate assembly"
t2t grch38 alternate_assembly ref_genome
updated by colindaven colindaven • written by Daniel • Daniel
1 vote
2 replies
1.2K views
edgeR batch effect model matrix sanity check
r edger rna-seq batch-effect
written by kmyers2 • kmyers2
0 votes
4 replies
1.4K views
minimap2 U to T conversion
minimap2
updated by GenoMax GenoMax • written by kewoka9286 • kewoka9286
0 votes
13 replies
3.4K views
BBMap Excess Fold Coverage
bbmap
updated by GenoMax GenoMax • written by shacon • shacon
0 votes
1 reply
907 views
Jellyfish docker image error with bam files
jellyfish docker kmers
updated by bhumm • bhumm • written by enee • enee
0 votes
4 replies
2.2K views
Overrepresented sequence in reverse read
fastqc genomics trimmomatic sequencing atac
written by Jaskaran Singh • Jaskaran Singh
0 votes
0 replies
447 views
Testing difference in median of clinical variabls in Rna-seq data
clinical-features rna-seq
updated by Ram Ram • written by Znow • Znow
0 votes
1 reply
714 views
Split the fastqc file base on barcode
fastq
updated by GenoMax GenoMax • written by QX • QX
1 vote
7 replies
1.7K views
Illumina Raw Data Multiple Read FIles Discussion
novaseqx pairedend illumina fungus
written by SomeOne • SomeOne
2 votes
6 replies
4.3K views
Intuitive Graphical Interface for Executing nf-core Pipelines
gui genomics ngs
updated by Matthias Zepper Matthias Zepper • written by Nour-eddine • Nour-eddine
0 votes
0 replies
517 views
Removing inherent biomarker sensor signals from the actual sensor readings
python data noise
written by bluecipher • bluecipher
0 votes
2 replies
2.4K views
How to use topGO tool for enrichment analysis of non-model organisms
topgo
updated by wdlin • wdlin • written by otieno43 • otieno43
0 votes
4 replies
1.8K views
RSEM getting TPM from STAR alignment
tpm star rnaseq rsem
written by Emily • Emily
0 votes
0 replies
564 views
Help : Run EVE for CAMK2A.
vep eve
written by Meto • Meto
1 vote
3 replies
1.1K views
Is TMM apropriated for Welch test between gender?
welch-test tmm
updated by Ram Ram • written by Znow • Znow
0 votes
5 replies
1.5K views
SPAdes error when trying to specify options for path
spades
written by AINUR FATIN BINTI MAZRI • AINUR FATIN BINTI MAZRI
0 votes
1 reply
1.1K views
Poor alignment post-SortMeRNA (rRNA removal)
star rrna rnaseq sortmerna
updated by andres.firrincieli andres.firrincieli • written by Fossil • Fossil
0 votes
1 reply
1.2K views
How to extract gene_counts_length_scaled matrix from either raw count matrix or SE object
recount3 salmon gtex tximport deseq2
updated by ATpoint ATpoint • written by Aditya • Aditya
0 votes
2 replies
1.8K views
how to see Pacbio reads in IGV
pbmm2 pbindex pacbio long-reads revio
updated by Pierre Lindenbaum Pierre Lindenbaum • written by María José • María José
1 vote
1 reply
1.0K views
TensorQTL Mapping - permutation p values for all associations
permutation tensorqtl
written by Paula • Paula
0 votes
3 replies
1.1K views
How to do preprocessing from fastqc
fastqc scrna-seq single-cell
updated by Ram Ram • written by Lulu • Lulu
2 votes
2 replies
1.2K views
Trying to use equivalence test from a diffbind dataset
diffbind r deseq2 chip-seq atac-seq
updated by ATpoint ATpoint • written by jandrade • jandrade
0 votes
2 replies
1.9K views
Consistent cluster coloring
r seurat
written by solo.albif • solo.albif
0 votes
3 replies
2.8K views
Slot to pull data from for DoHeatmap
deseq2 doheatmap seurat pseudobulk
updated by Ming Tommy Tang Ming Tommy Tang • written by bio_info • bio_info
0 votes
0 replies
818 views
News: online course on Adaptation Genomics
structural-variants population-genomics adaptation-genomics
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
3 replies
3.6K views
Is it possible to modify the gene names from the x-axis in Seurat::Dotplot?
seurat scrna-seq single-cell dotplot
updated by Ram Ram • written by ev97 • ev97
0 votes
0 replies
763 views
Setting the size for finding motifs using homer
motif homer
written by gogeni5529 • gogeni5529
4 votes
13 replies
9.6K views
Centrimo error: Template does not contain data section
chip-seq meme
updated by Johan Zicola Johan Zicola • written by Matus • Matus
0 votes
2 replies
1.3K views
Finding DEGs of cell type comprising of more than one clusters
deg findallmarkers scrna-seq single-cell
updated by Ram Ram • written by TNF_alpha • TNF_alpha
0 votes
0 replies
597 views
Clustering a rare variant on the GDA array
array gda clustering rare-variant genome-studio
updated by Ram Ram • written by panacotaforcota • panacotaforcota
0 votes
3 replies
1.9K views
PCR duplicate removal in single-end atac-seq data
atac-seq pcr-duplicate
updated by ATpoint ATpoint • written by sarahmanderni sarahmanderni
0 votes
6 replies
2.1K views
METAL ERROR: The command you issued could not be processed ...
meta-analysis metal gwas
written by JJ • JJ
0 votes
1 reply
1.1K views
dbSNP download and merge to my data
snp gwas dbsnp
updated by GenoMax GenoMax • written by SeoG • SeoG
1 vote
2 replies
1.4K views
NGS Data Analysis
ngs genome sequencing
updated by a.alnawfal.1992 a.alnawfal.1992 • written by Bindiya • Bindiya
0 votes
1 reply
1.0K views
Annotating Pathways in a network
pathways cytoscape network
updated by Scooter Scooter • written by SKY • SKY
0 votes
2 replies
1.1K views
Enrichment Analysis of Pathways
enrichment-analysis cytoscape
updated by Scooter Scooter • written by SKY • SKY
0 votes
7 replies
3.0K views
Salmon ~ Effective Length
salmon
updated by Rob Rob • written by chrisk • chrisk
0 votes
5 replies
2.2K views
MAKER2 no FASTAs generated
maker fasta fasta_merge genome annotation
updated by Kinoppy • Kinoppy • written by jamie.pike jamie.pike
0 votes
1 reply
728 views
vg giraffe, accept admixed single and paired reads as input
vg
updated by Jordan M Eizenga • Jordan M Eizenga • written by Thomas • Thomas
0 votes
0 replies
470 views
vg search for all specific kmer/motif (e.g., RE site) occurrences in pangenome graph
vg
written by Thomas • Thomas
1 vote
2 replies
1.5K views
Phasing human samples with Shapeit4
phasing shapeit shapeit4
written by Private • Private
0 votes
4 replies
1.3K views
In silico PCR - multiple Primers and multiple sequences at the same time
pcr
updated by Ram Ram • written by sulichkarolina • sulichkarolina
0 votes
2 replies
976 views
scaling for kallisto estimate counts
differential-gene-expression rnalysis kallisto
written by Meghan.T • Meghan.T
0 votes
3 replies
2.8K views
Submitting to GEO: 10x Fixed RNA profiling (Single Cell Gene Expression Flex)
rna-seq
updated by matthewsmith • matthewsmith • written by psm psm
Recent Votes
Recent Locations
Recent Replies