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0 votes
2 replies
847 views
Human sequence data mapped to mouse genome
rna-seq
written by sh 0
3 votes
5 replies
2.1K views
Adjusting for covariates such as duration of diabetes, age, sex and BMI
limma covariates voom
updated by Gordon Smyth 916 • | written by sukeshinik5 5
0 votes
1 reply
709 views
Clusterprofiler with M. tuberculosis genome
clusterprofiler
updated by bio_info 2 • | written by Maurice 0
0 votes
10 replies
2.9K views
CutNtag normalization without spike in
cutntag csaw chipseq diffbind
written by gamma.jian 4
0 votes
7 replies
3.1K views
gene expression normaliztion
edger rna-seq gene-expression
updated by Gordon Smyth 916 • | written by bioinfo1994 2
0 votes
0 replies
749 views
How VEP BAM Edit works?
variant vep
written by bharata1803 58
0 votes
0 replies
559 views
Automated analysis of amplicon sequence datasets from multiple FASTQ files
dada2 amplicon otu asv
written by Bio_12 0
0 votes
9 replies
4.8K views
pbmm2 alignment of long reads
long-reads pbmm2 alignment
written by priya.bmg 7
0 votes
1 reply
1.2K views
GATK GRCh38 genome version for biomaRt
biomart
updated by GenoMax 16K • | written by ramiro.barrantes 6
0 votes
12 replies
5.2K views
mergeCutHeight in WGCNA and correlation type for correct module identification
mergecutheight correlation wgcna categorigal
written by seta 191
0 votes
4 replies
1.6K views
How to construct Mitochondrial Haplotype network?
mitochondrial haplotype pacbio network mtdna
written by hashim.rana11 4
0 votes
1 reply
1.2K views
Need Help with Normalizing Western Blot Data with Inter-Gel Variability
western-blot
updated by rfran010 174 • | written by Anto 0
0 votes
2 replies
1.5K views
Error while using pbsv discover, "ERROR: map::at"
bam pacbio pbsv
written by wch2123 1
0 votes
0 replies
766 views
News: Online course: Introduction to CRISPR
crispr genome-editing evolution
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
3 replies
1.1K views
To extract uniques SNPs froma. multisample VCF file
vcf
written by sam 3
0 votes
1 reply
1.1K views
Converting gtf file from Ensembl to the UCSC Ensembl format (ensGene.txt format)
gtf ensembl ucsc annotation
updated by sam 3 • | written by rahu 0
0 votes
3 replies
1.0K views
Convert whole genome mRNA file from NCBI to gff file.
a
updated by sam 3 • | written by nish_laa 0
0 votes
6 replies
1.7K views
Finding scRNA-seq datasets of healthy human ovaries
python geo single-cell rna
updated by Ram 4.5K • | written by AlexStar 22
0 votes
5 replies
1.7K views
DESeq2_ How to Account for the Expression Levels of a Specific Gene?
differential-expression-analysis deseq2
updated by jared.andrews07 1.9K • | written by BioNovice247 3
0 votes
5 replies
3.0K views
Subset cells in Seurat data based on reads and gene expression
seurat
updated by Ram 4.5K • | written by bgbs 0
1 vote
4 replies
4.4K views
Tool: Neurosnap: Platform for making access to bioinformatic tools as simple as possible
protein docking rna transcriptome toxicity
updated by Kevin 10 • | written by keaun 4
0 votes
0 replies
547 views
From plink to GeneHunter format
linkage-analysis
updated by Ram 4.5K • | written by lucas_ 2
0 votes
2 replies
846 views
Comparative analyses of non coding genetic sequences
non-coding-sequences evolution
updated by Ram 4.5K • | written by José 1
1 vote
2 replies
1.2K views
Shallow sequencing is not a random subsample of deep sequencing
illumina scrna-seq
written by jockbanan 44
0 votes
4 replies
2.1K views
Volcano plot with different font size for gene labels
rna-seq enhancedvolcano volcano-plot
updated by Trivas 191 • | written by Assa Yeroslaviz 197
0 votes
0 replies
510 views
Online tool for Kaplar-Meier Plot for bone and lung free-metastases survival
survival kaplar-meier-plot free-metastases
updated by Ram 4.5K • | written by matteo.levorato 0
0 votes
7 replies
2.6K views
Overlapping cut and tag H3k27 peaks and ATAC-Seq peaks
atac-seq cutntag
updated by Ram 4.5K • | written by new 1
0 votes
1 reply
1.6K views
Comprehensive list of public protein databases
blast
updated by Ram 4.5K • | written by jm7618 0
0 votes
1 reply
801 views
Pathway and associated gene coordinates
pathway-analysis
updated by yura.grabovska 94 • | written by Can_Res 0
0 votes
3 replies
5.2K views
Open the Seurat count matrix in RStudio
seurat rstudio
updated by ATpoint 9.1K • | written by solo.albif 0
0 votes
1 reply
1.1K views
GSVA Setup
gsva gene-enrichment
updated by Ram 4.5K • | written by michaelhojungyoon 1
1 vote
9 replies
2.4K views
How to get gene name for 900k SNPs
biomart entrez pyensembl snp gene
updated by Pierre Lindenbaum 17K • | written by _quantum_girl_ 8
0 votes
4 replies
1.3K views
Is there any set threshold for hisat2 alignment and featurecount assignment to select samples further?
hisat2 alignment featurecount
written by sukeshinik5 5
0 votes
0 replies
741 views
primer blast error
blast primer
written by emma.a 13
0 votes
5 replies
2.0K views
ROH and Manhattan plot
roh manhattan plink
updated by bk11 312 • | written by Star:) 5
0 votes
0 replies
669 views
Assembly by the metaSPAes from several libraries of paired-end reads with different reads lengths.
paired illumina metaspades mgi
written by SergFly 5
1 vote
6 replies
3.8K views
Why is UCSC lift over failing to convert a specific position?
ucsc liftover
updated by cmdcolin 448 • | written by _quantum_girl_ 8
0 votes
2 replies
1.4K views
gProfiler vs Panther_go in overrepresentation pathways R analysis
pathways reactome panther overrepresentation gprofiler
updated by NancyTLi 2 • | written by tchosange 0
0 votes
3 replies
1.3K views
Reactome GSA results
pathway-analysis reactomegsa
written by Shaimaa Gamal 1
0 votes
2 replies
998 views
Batch effects in RNAseq
batch-effects deseq2 rna-seq
written by rb_99 0
0 votes
3 replies
1.2K views
How to get reference lines haplotype path from PHG
haplotype phg reference
updated by lcj34 42 • | written by zx 0
0 votes
1 reply
876 views
SNPSift countRef() on a VCF with missing values
snpsift
written by FJK 0
0 votes
0 replies
1.2K views
News: Webinar: "Integrated analysis of single-cell data across technologies, modalities, and perturbations" by Rahul Satijia (author of Seurat)
integrated-analysis seurat single-cell
updated by Ram 4.5K • | written by Claire Watson 6
0 votes
8 replies
2.8K views
How to find transcription factors list?
genes tf
updated by gglim 22 • | written by Tiara 0
0 votes
8 replies
3.8K views
Interaction analysis using DESeq while adjusting for covariates.
deseq2 interaction rna-seq
updated by Thomas Neff 1 • | written by Sumit Paliwal 4
0 votes
1 reply
1.7K views
Forum: Looking for opinions on the MSc Computational Biology and Bioinformatics program at the University of Göttingen
masters germany
updated by GenoMax 16K • | written by adina 0
2 votes
7 replies
2.4K views
Does PRS distribution of target data should follow gaussian distribution?
polygenic-risk-score prs gwas
updated by Ram 4.5K • | written by bubgoose 2
0 votes
3 replies
1.4K views
How to Convert 10x BCL Files to FASTQ Without a Sample Sheet Using Only Run Report Information?
bcl2fastq
updated by Ram 4.5K • | written by Divya 0
0 votes
5 replies
2.1K views
Strand-specific quantification of RNA-seq data without strand-aware mapping
rna-seq yeast
updated by Carlo Yague 906 • | written by tdsone 0
0 votes
5 replies
1.9K views
Warning in Denovo Genome Assembly via SPADes
assembly spades fungi illumina
updated by Joe 2.2K • | written by SomeOne 33
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