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1 vote
0 replies
649 views
Codon usage bias analysis when comparing RNA-seq and proteome
rna-seq proteome codon-usage-bias
written by predeus predeus
0 votes
4 replies
1.4K views
Fold changes reversed - DESeq2
deseq2 rna-seq
updated by i.sudbery i.sudbery • written by robert.flynn.21 • robert.flynn.21
0 votes
1 reply
988 views
Genome Alignment of Zebrafish ATAC Seq Data
encode bowtie alignment zebrafish atac
updated by Jack Tierney • Jack Tierney • written by Jaskaran Singh • Jaskaran Singh
0 votes
5 replies
2.7K views
Extracting UMIs from NEXTFLEX Small RNA-Seq reads using UMI_tools
smallrnaseq umi nextflex umi_tools mirna
updated by i.sudbery i.sudbery • written by MH85 • MH85
0 votes
0 replies
484 views
Cell fractions (from single cell) as variable in Cox Survival model
cox single-cell
updated by Ram Ram • written by Nona • Nona
0 votes
1 reply
821 views
Obtaining OMA and HOG IDs
oma browser
updated by Adrian Altenhoff Adrian Altenhoff • written by gtzotzos • gtzotzos
0 votes
1 reply
793 views
Enriched Bar Chart on Blast2go gives percentage more than 100%
blast2go
written by Mohamed Abderrahmane • Mohamed Abderrahmane
0 votes
5 replies
1.5K views
Exonerate command in Ubuntu
pseudogene-pipeline exonerate pseudogenes
updated by Ram Ram • written by subashini.fbtpb106 • subashini.fbtpb106
0 votes
0 replies
530 views
Whether the hifiasm (hic) will filter unitig during the process from unitig to contig
hifiasm
updated by GenoMax GenoMax • written by 2782887377 • 2782887377
0 votes
0 replies
476 views
Discover_pseudogenes pipeline - GITHUB
pseudogene-mining pseudogenes transcribed-pseudogenes
updated by Ram Ram • written by subashini.fbtpb106 • subashini.fbtpb106
1 vote
2 replies
2.9K views
Moving labels in a volcano plot with ggplot2
ggplot2 volcano-plot
updated by Jeremy • Jeremy • written by robert.flynn.21 • robert.flynn.21
0 votes
7 replies
2.2K views
Obtaining rRNA and tRNA contaminant file for RiboSeq
ribo-seq silva rrna
written by Daniel • Daniel
0 votes
4 replies
1.6K views
Filter VCF based on INFO column values in R
r vcf
updated by Michael Dondrup Michael Dondrup • written by Stavroula • Stavroula
0 votes
6 replies
2.4K views
Help with Biopython for Beginner
python orf fasta biopython
updated by naveennavinbeast • naveennavinbeast • written by cput • cput
0 votes
7 replies
1.9K views
Ribosomal RNA Depletion in silico
minimap rna-seq rrna nanopore
updated by GenoMax GenoMax • written by CL • CL
0 votes
5 replies
1.7K views
Bulk rna sequencing
rna-seq differential-expression
updated by Thomas Neff • Thomas Neff • written by Rosie • Rosie
0 votes
0 replies
708 views
News: Online single-cell RNA-seq Analysis Course (Nov 4-8)
rnaseq bioconductor single-cell
written by Physalia-courses Physalia-courses
0 votes
4 replies
1.5K views
Subset VCF to exon region but still get intron_variant annotation
ensembl vcf vep vcftools
updated by rfran010 • rfran010 • written by tomas4482 • tomas4482
1 vote
2 replies
1.3K views
Illumina runfolder structure
bcl runfolder illumina bcl2fastq novaseq
written by scsc185 • scsc185
0 votes
2 replies
977 views
Analysing CITE-seq data where only 4 samples are CITE-seq and rest 11 are scRNA-seq
cite-seq analysis seurat multi-omics single-cell
written by Sagrika • Sagrika
0 votes
3 replies
2.7K views
Creating GCT files
rnaseq gtex gct
updated by Ram Ram • written by Misk • Misk
0 votes
1 reply
930 views
ChIP-seq SICER
sicer chipseq
updated by Ming Tommy Tang Ming Tommy Tang • written by sk_24 • sk_24
1 vote
4 replies
2.2K views
What path list should be used to surject GAM to GRCh38/CHM13 reference genome
vg
written by Hanc • Hanc
0 votes
3 replies
1.3K views
picard – scatter intervals by n uses
bedtools intervals picard bed
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Matteo Ungaro • Matteo Ungaro
0 votes
0 replies
608 views
Centrifuge Classifying Reads, but the Report is Empty
metagenomics centrifuge
updated by GenoMax GenoMax • written by echolley • echolley
0 votes
3 replies
3.0K views
Seeking Tutorial for Downloading TCGA Data with TCGAbiolinks and Converting to TPM
tpm tcga
updated by Ming Tommy Tang Ming Tommy Tang • written by Znow • Znow
0 votes
11 replies
9.0K views
How to download a file from zenodo link without leaving terminal?
axel linux curl wget
updated by GenoMax GenoMax • written by SlowSD • SlowSD
0 votes
3 replies
1.2K views
how to measure significance of improvement between two methods during modeling
spearman correlation
updated by Jean-Karim Heriche Jean-Karim Heriche • written by rheab1230 • rheab1230
0 votes
1 reply
713 views
How to Predict Drug Targets Using Single-Sample RNA-Seq Data?
drug target rna-seq
updated by DGTool • DGTool • written by Musab • Musab
0 votes
1 reply
718 views
Estimate large insertions size in WGS data.
ngs diagnostic sv wgs
updated by GenoMax GenoMax • written by meetmet • meetmet
0 votes
2 replies
1.0K views
.tar files Microarray
microarray
written by Nona • Nona
0 votes
4 replies
1.7K views
vg autoindex memory issues Signal 6 has occured
vg
updated by Jordan M Eizenga • Jordan M Eizenga • written by l.dammer • l.dammer
0 votes
0 replies
458 views
SUPPA, Junctions Dealing
suppa junctions
written by smanzano250800 • smanzano250800
0 votes
3 replies
8.0K views
bcftools to remove non-variants sites
bcftools snp vcftools vcf filter
updated by zx8754 zx8754 • written by shiy05 • shiy05
0 votes
6 replies
1.4K views
Map genome to a particular region
mapping genome
updated by GenoMax GenoMax • written by JohnOak • JohnOak
0 votes
1 reply
1.3K views
Why there are only two .fastq files in scATAC-seq raw data?
scatac-seq cellranger 10x
updated by Ram Ram • written by 浩然 • 浩然
0 votes
3 replies
3.3K views
How to measure pairwise genetic distance in all samples of a VCF file
pop-gen pairwise-distance vcf
updated by hewm2008 • hewm2008 • written by LDT • LDT
0 votes
6 replies
2.0K views
Removing batch effect in time-series data
batch-effect
updated by Ram Ram • written by Álvaro • Álvaro
0 votes
3 replies
1.6K views
Interproscan
configuration install interproscan exist not
updated by GenoMax GenoMax • written by MaxMin • MaxMin
0 votes
8 replies
1.9K views
BCFtools not calling variant, despite adequate coverage
bcftools variant calling
updated by GenoMax GenoMax • written by mpiersonsmela • mpiersonsmela
0 votes
4 replies
1.9K views
New versions of the same transcripts ID may have different exons coordinates??
refseq
updated by i.sudbery i.sudbery • written by ManuelDB ManuelDB
0 votes
1 reply
751 views
How can I get the total list of RefSeq transcripts?
refseq
updated by GenoMax GenoMax • written by ManuelDB ManuelDB
1 vote
13 replies
5.4K views
Failed to download data from EBI BioStudies with ascp/Aspera
aspera ebi
updated by Aster • Aster • written by biock • biock
0 votes
1 reply
600 views
Problem in input data loading in Structure
structure-pritchard
updated by Mensur Dlakic Mensur Dlakic • written by RN • RN
0 votes
0 replies
580 views
running multiple GEO Dataset projects
geo
updated by Ram Ram • written by Bushra Bibi Bushra Bibi
0 votes
0 replies
903 views
MEME PWM format - what is the meaning of nsites?
motif sequence meme-suite pwm meme
written by mcsimenc • mcsimenc
0 votes
2 replies
2.0K views
Example human WGS fastq data
wgs
updated by Ming Tommy Tang Ming Tommy Tang • written by ramiro.barrantes • ramiro.barrantes
2 votes
0 replies
1.6K views
Tutorial: Seurat Object Explained: Beginner's Guide and Demo
scrna-seq seurat single-cell
updated by Ram Ram • written by Ming Tommy Tang Ming Tommy Tang
0 votes
1 reply
1.4K views
Empty txt file as an output of "seqkit stats" for multiple fastq files
ngs linux
updated by shenwei356 shenwei356 • written by Mohamed Samir • Mohamed Samir
0 votes
4 replies
1.3K views
how linearize nucleotide lines in axt file
axt
updated by dariober dariober • written by resug • resug
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