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0 votes
1 reply
840 views
Understanding Discrepancies in Deduplication Rates Between Forward and Reverse Reads in Metagenomic Data
metagenomics deduplicate
updated by Ram 4.5K • | written by Stiofan 2
0 votes
3 replies
1.0K views
Changing unknown transcript identifiers in RNASeq data to gene names
rnaseq
updated by i.sudbery 2.3K • | written by jasminestaples1 0
0 votes
1 reply
1.4K views
Downloading 10X Spatial Transcriptomic Data from GEO
geo spatial-trascriptomics single-cell
updated by GenoMax 16K • | written by biocellbio 0
0 votes
1 reply
982 views
Prokka annotation
prokka
updated by Joe 2.2K • | written by Cancerplse 0
0 votes
0 replies
557 views
How to adjust covariates with RRBS data?
covariates rrbs
updated by Ram 4.5K • | written by Dff045 0
0 votes
2 replies
1.2K views
No peaks detected in chipseq analysis-macs3
chipseq
updated by Darked89 469 • | written by bioinfo_ga 7
1 vote
3 replies
1.7K views
Increase the width of one plot in multiple plots
r ggplot2
updated by zx8754 1.2K • | written by G.S 6
0 votes
2 replies
1.1K views
Infer UMI from fastq files
bcl2fastq transcriptome rna-seq umi
written by ATRX 118
0 votes
2 replies
2.4K views
Why does DESeq2 give negative log2 fold change in treatment vs control for some genes when normalized counts are higher in treatment? (Already checked my condition factors are correct)
deseq2
written by mropri 17
2 votes
1 reply
2.3K views
Tool: Just released VEBA 2.0 in Nucleic Acids Research, a modular genome-resolved metagenomics/metatranscriptomics software suite that can handle prokaryotes, (micro)eukaryotes, and viruses
metatranscriptomics metagenomics microbiome veba
written by O.rka 75
0 votes
3 replies
2.0K views
Is it possible to access controlled TCGA data through TCGA Biolinks in R?
r gdc rstudio tcga
updated by Ram 4.5K • | written by Destiny 2
0 votes
2 replies
992 views
Correcting a lack of gaps in bwa aln mapping of unpaired reads
bwa
written by shpak.max 8
0 votes
0 replies
541 views
unable to produce cnr files
cnvkit
updated by Ram 4.5K • | written by ww22runner 6
0 votes
11 replies
6.3K views
Errors with GSEA using clusterProfiler
clusterprofiler gsea
written by bio_info 2
0 votes
4 replies
1.2K views
Counting Specific Genetic Variants in IGV Using Fixed Read Data
variants igv
written by safeassli 1
0 votes
0 replies
594 views
CNNScoreVariants - GATK 4.5.0.0 error
cnnscorevariants gatk
updated by Ram 4.5K • | written by dophuochuy94 0
0 votes
3 replies
1.2K views
Somatic variants in different tumor states with no healthy control samples
somatic-variants
updated by Ram 4.5K • | written by jaime alvarez 3
1 vote
8 replies
3.5K views
How to use Anaconda/Miniconda more effectively ?
anaconda miniconda
updated by H.Hasani 101 • | written by SomeOne 33
0 votes
2 replies
1.2K views
Minimum Spanning Tree for SNPs
mst matrix snp distance bowtie2
written by davidmaimoun 6
0 votes
2 replies
816 views
genome assembly for a pathogens
assembly
updated by dthorbur 350 • | written by tubs 0
0 votes
2 replies
814 views
Error while validating metadata in MG-RAST
gut microbiome metadata mg-rast
written by biobio 0
0 votes
2 replies
1.5K views
Reformatting Fastq to Fasta for Metagenomic Analysis
metagenomics fasta fastq
updated by colindaven 844 • | written by echolley 2
0 votes
0 replies
561 views
News: Course on Python for Biologists (online, July 8th-11th)
ngs python-programming
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
0 replies
702 views
Annotation differences annotatr and minfi getAnnotation
annotatr minfi 450k annotation
updated by GenoMax 16K • | written by altuda 0
0 votes
5 replies
1.7K views
low Successfully assigned alignments
featurecounts rnaseq
updated by Carlo Yague 906 • | written by Srujana 1
0 votes
5 replies
1.6K views
DNA methylation data and P values
r p-values dna-methylation
updated by Ram 4.5K • | written by maryak 2
0 votes
2 replies
1.9K views
File conversion: a2m To fasta
a2m fasta a3m
updated by Mensur Dlakic 3.0K • | written by Meto 0
0 votes
3 replies
1.4K views
Only one node generated after using decision tree model on training data set
machine-learning decision-tree
written by Mohamed Samir 3
0 votes
1 reply
702 views
glmGamPoi offset matrix details
glmgampoi rna-seq scrna-seq
updated by ATpoint 9.1K • | written by Alec 0
0 votes
1 reply
1.2K views
Unable to fetch fasta files of contigs using Edirect in Linux
edirect ncbi whole-genome-sequencing
updated by Ram 4.5K • | written by Mohamed Samir 3
1 vote
2 replies
1.6K views
Job: Consultant to update a Snakemake workflow with the new Kubernetes executor plugin for Snakemake 8
kubernetes devops executor aws snakemake
updated by ATpoint 9.1K • | written by jonrkarr 11
0 votes
2 replies
1.2K views
Statistical analysis of quantified proteomic data: ctrl vs. mut
statistics proteomics
updated by ATpoint 9.1K • | written by C. Ryder 0
0 votes
3 replies
1.1K views
Create table of major/minor alleles per SNP, per individual
genotyping allele wgs
updated by Ram 4.5K • | written by eaabbott0 0
0 votes
2 replies
1.1K views
Advice for analyzing SnpEff results
snpsift snpeff vcf
updated by Ram 4.5K • | written by ekirsch 0
0 votes
2 replies
3.5K views
Should I normalize and scale my data again after doing subset(seu, idents=" ") in Seurat?
normalization seurat scrna-seq
written by ev97 4
0 votes
0 replies
911 views
advice for wattersons theta calculation using vcf file
diversity vcf theta
written by ekirsch 0
0 votes
4 replies
2.0K views
Histogram of normalized counts for each cell type
seurat single-cell
written by odi 3
0 votes
3 replies
2.1K views
filter reads based on mapped length
samtools reads bam
updated by John Marshall 308 • | written by marco.barr 22
0 votes
1 reply
831 views
Computer modelling of metformin effect on mitochondria
metformin modelling simulation
updated by GenoMax 16K • | written by Maryna 0
6 votes
2 replies
1.3K views
Tool: HGNC Version Control
git control symbols version gene
written by barslmn 245
0 votes
2 replies
802 views
Public dataset for tracking Doctors' treatment histories
database
updated by ATpoint 9.1K • | written by Unk_Student 0
1 vote
0 replies
629 views
RNA-Seq vs DNA-Seq variant calling
benchmark dna-seq rna-seq giab vcf
written by Esraa 1
0 votes
4 replies
1.4K views
RNAseq .fastq files on multiple flowcells, how to proceed
rna-seq illumina novaseq fastq
written by christiantd 0
0 votes
0 replies
695 views
ABBA-BABA Analysis for Identifying Ancestral Contributors in Plant Species Evolution
orthofinder d-suite abba-baba phylogenetics
written by alexis.groppi 4
0 votes
0 replies
531 views
How to find the Full chromosome details using RefSeq ID from Bio Projects section of NCBI portal
plasmids refseq
updated by Ram 4.5K • | written by AKANKSHA 0
0 votes
0 replies
505 views
Help Needed with Finding Homologous Genes between Rat and Human for Dataset Integration
biomart homologous-genes
updated by Ram 4.5K • | written by dxj294 0
0 votes
0 replies
596 views
Calculating GQ for VCF file
vcf gq
updated by Ram 4.5K • | written by Tsin-Lau 0
0 votes
6 replies
1.7K views
Trimmomatic error: Exception in thread "main" java.lang.NumberFormatException
linux windows trimmomatic
updated by Ram 4.5K • | written by Gilad 0
0 votes
2 replies
880 views
miRNA analysis workflow from total RNA Sequencing
mirna-seq
written by mobina 0
0 votes
4 replies
1.5K views
Error using parasiteMart
wormbaseparasite ensembl parasite_mart wormbase biomart
updated by GenoMax 16K • | written by Emily 2
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