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0 votes
0 replies
589 views
Good books or review papers on mendelian randomization and eQTLs?
eqtl randomization mendelian
written by _quantum_girl_ 8
0 votes
4 replies
1.6K views
Two different RNA sequencing sets that have gene names set up differently - how to normalize?
r rna-sequencing
written by awsk 0
0 votes
1 reply
758 views
Help with phylogenetic analysis
phylogenetic-analysis genome
updated by Mensur Dlakic 3.0K • | written by KaTi 0
0 votes
2 replies
1.2K views
How to install BioNano Access tool to visualize Bionano optical map outputs?
bionano genome optical-map
updated by eebloom 11 • | written by BioinfoBee 0
0 votes
0 replies
1.2K views
Job: Senior Bioinformatics Engineer
bioinformatics-engineer simons-foundation
updated by Ram 4.5K • | written by vanessa 1
0 votes
2 replies
2.5K views
CellCycleScoring error
seurat cell-cycle scrna
written by marco.barr 22
1 vote
4 replies
1.3K views
bedtools -F minimum overlap, possible BUG ?
bedtools rna-seq
updated by Ram 4.5K • | written by difraiadomenico 1
0 votes
2 replies
2.1K views
Understanding Differing results between STAR and kallisto
quantification star kallisto rna-seq
updated by rfran010 174 • | written by Assa Yeroslaviz 197
0 votes
1 reply
980 views
QUALITY SCORE OF human vcf file genearted through GATK
gatk phred variant-calling
written by ashaneev07 5
0 votes
1 reply
1.0K views
lncRNA-miRNA interaction
mirna lncrna
updated by onco-research 0 • | written by ziyan 0
0 votes
0 replies
624 views
News: Online Course: Generalized Linear Mixed Models in R (Oct 14-18)
r mixed-models gllm
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
0 replies
794 views
Detection of germinal CNVs with CNVkit
cnvkit cnv
updated by Ram 4.5K • | written by g.spirito 0
0 votes
2 replies
1.1K views
Removal of low read counts prior to DESeq2?
deseq2 rna-seq
written by robert.flynn.21 1
0 votes
3 replies
1.8K views
ENA browser fasta endpoint returns 500, even on their own example
ena fasta
updated by Michael Dondrup 5.6K • | written by Kevin 0
0 votes
2 replies
1.1K views
Problem in RNASeq data analysis
transcriptomics rnaseq
written by shwetamgr1 2
1 vote
3 replies
4.2K views
unmapped reads with pysam
pysam
updated by Ram 4.5K • | written by grant.hovhannisyan 261
0 votes
11 replies
5.1K views
How to extract unmapped mate for specific reads using pysam or other module in python?
pysam
updated by i.sudbery 2.3K • | written by Xi 1
0 votes
5 replies
1.4K views
Unable to retrieve the "Assembly method" of an assembly using Edirect in the terminal
assembly sequencing genomics
written by Mohamed Samir 3
0 votes
1 reply
1.4K views
What tools are there to quantify m6A methylation of Nanopore bam files?
m6a methylation nanopore rna
updated by Ram 4.5K • | written by smb51095 0
0 votes
0 replies
668 views
How are .cmap files generated using Bionano?
bionano map genome assemblies
written by BioinfoBee 0
0 votes
9 replies
28K views
VCF To FASTA
next-gen genetic genome
updated by LauferVA 497 • | written by Myo Naung 1
5 votes
4 replies
1.8K views
How to identify cell identities in mixed scRNA-seq using mutational signatures from bulk RNA-seq
rna-seq scrna-seq
written by Chilly 129
0 votes
0 replies
424 views
Progeria samples DNA WGBS
progeria
updated by Ram 4.5K • | written by Ivan 1
0 votes
0 replies
722 views
Extracting SNPs from UKBB TOPMED imputation
nexus biobank dna topmed uk
written by Harry 0
0 votes
1 reply
887 views
Comparing Gene Expression Before and After Treatment Using Nanopore Sequencing Data
sequencing normalisation nanopore
written by Dim 0
0 votes
6 replies
1.5K views
Sorting repetitive Gene Ontology entries in one line
gene-ontology
updated by Ram 4.5K • | written by resug 4
0 votes
0 replies
820 views
News: ONLINE COURSE – Introduction to Single Cell Analysis (ISCA01)
trailmaker single-cell rna-seq scrna-seq
updated by Ram 4.5K • | written by oliverhooker 14
0 votes
0 replies
651 views
News: ONLINE COURSE – Genome Assembly and Annotation (GAAA01)
annotation genome assembly genomics
updated by Ram 4.5K • | written by oliverhooker 14
0 votes
0 replies
862 views
News: ONLINE COURSE – Introduction to Metabarcoding and Metagenomics Analysis (IMAM01)
metabarcoding metagenomics
updated by GenoMax 16K • | written by oliverhooker 14
0 votes
2 replies
1.0K views
News: ONLINE COURSE – Metabarcoding Pipelines for Eukaryotic Communities
metabarcoding eukaryotes
updated by Ram 4.5K • | written by oliverhooker 14
0 votes
4 replies
1.3K views
Error: Encountered internal Bowtie 2 exception (#1)
bowtie2
updated by GenoMax 16K • | written by gabriel 0
0 votes
2 replies
926 views
Error installing ACTIONet
r
written by sidrah.maryam 7
0 votes
1 reply
749 views
Using SSL (Secure Sockets Layer) for PHG
ssl phg
updated by lcj34 42 • | written by chakhouski.artur 0
0 votes
5 replies
2.8K views
Calling variants/SNP for single-cell RNA-seq data
snp scrnaseq
updated by yura.grabovska 94 • | written by QX 9
0 votes
1 reply
1.4K views
difficulties in using HADDOCK 2.4 for protein-ligand docking
ligand
updated by 래건 0 • | written by barbarainb 0
1 vote
0 replies
873 views
News: "Introduction to Deep Learning for Biologists" - Online Course (30 Sep - 4 Oct 2024)
deep-learning machine-learning python cnn
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
0 replies
872 views
Split Seurat assay into two assays
r seurat
updated by Ram 4.5K • | written by solo.albif 0
0 votes
3 replies
1.1K views
Fastq with 2 presence of adapter sequences
fastqc
updated by GenoMax 16K • | written by Armando 0
0 votes
7 replies
1.7K views
Bulk RNA-Seq Data That's Only Tumors (No Normal/Reference)?
rna-seq dea
updated by Ram 4.5K • | written by James 0
1 vote
1 reply
846 views
Ranking the GSEA Results
log2fc p-value deseq2 gsea
updated by dthorbur 350 • | written by V_Vibes 1
0 votes
1 reply
958 views
Does it make sense to do hdWGCNA following the DEG analysis?
deg wgcna single-cell
updated by edoardofilippi1998 0 • | written by paria 11
0 votes
0 replies
407 views
Define outliers in proportional difference in scRNAseq analysis
scrna-seq
updated by Ram 4.5K • | written by Yuzu776 0
0 votes
2 replies
1.3K views
Understanding dimred in scater for scRNASeq
singlecellexperiment fastmnn scater scrnaseq
updated by jared.andrews07 1.9K • | written by sp 0
0 votes
2 replies
1.1K views
Monocle3 - gene expression dot plot (ggplot2 equivalent)
monocle3 ggplot2 data-visualization
updated by gglim 22 • | written by seattlescientist_01 0
2 votes
0 replies
721 views
Blog: Investigating male X heterozygosity in short read sequencing
heterozygosity nextflow sequencing chrx
written by barslmn 245
0 votes
1 reply
1.8K views
Bismark Report Merging
methylation bismark wbgs
updated by Ram 4.5K • | written by maxrhighsmith 1
0 votes
3 replies
1.1K views
How to carry out cell deconvolution GIVEN known cell proportions already?
deconvolution
written by Rashid 0
1 vote
0 replies
611 views
News: Course: Analysing Biodiversity Through Time and Space using R
r biodiversity-data
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
1 reply
729 views
miRDeep2 problem with miRNA ID's
mirna mirdeep2
updated by GenoMax 16K • | written by Ornella Stefanía 0
0 votes
3 replies
1.2K views
Create a GenBank file for a novel organism
pathway genome assembly annotation
written by scarface 0
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