This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
1 reply
1.6K views
Comprehensive list of public protein databases
blast
updated by Ram Ram • written by jm7618 • jm7618
0 votes
1 reply
800 views
Pathway and associated gene coordinates
pathway-analysis
updated by yura.grabovska • yura.grabovska • written by Can_Res • Can_Res
0 votes
3 replies
5.1K views
Open the Seurat count matrix in RStudio
seurat rstudio
updated by ATpoint ATpoint • written by solo.albif • solo.albif
0 votes
1 reply
1.0K views
GSVA Setup
gsva gene-enrichment
updated by Ram Ram • written by michaelhojungyoon • michaelhojungyoon
1 vote
9 replies
2.3K views
How to get gene name for 900k SNPs
biomart entrez pyensembl snp gene
updated by Pierre Lindenbaum Pierre Lindenbaum • written by _quantum_girl_ • _quantum_girl_
0 votes
4 replies
1.3K views
Is there any set threshold for hisat2 alignment and featurecount assignment to select samples further?
hisat2 alignment featurecount
written by sukeshinik5 • sukeshinik5
0 votes
0 replies
736 views
primer blast error
blast primer
written by emma.a • emma.a
0 votes
5 replies
1.9K views
ROH and Manhattan plot
roh manhattan plink
updated by bk11 • bk11 • written by Star:) • Star:)
0 votes
0 replies
656 views
Assembly by the metaSPAes from several libraries of paired-end reads with different reads lengths.
paired illumina metaspades mgi
written by SergFly • SergFly
1 vote
6 replies
3.8K views
Why is UCSC lift over failing to convert a specific position?
ucsc liftover
updated by cmdcolin cmdcolin • written by _quantum_girl_ • _quantum_girl_
0 votes
2 replies
1.3K views
gProfiler vs Panther_go in overrepresentation pathways R analysis
pathways reactome panther overrepresentation gprofiler
updated by NancyTLi • NancyTLi • written by tchosange • tchosange
0 votes
3 replies
1.3K views
Reactome GSA results
pathway-analysis reactomegsa
written by Shaimaa Gamal • Shaimaa Gamal
0 votes
2 replies
987 views
Batch effects in RNAseq
batch-effects deseq2 rna-seq
written by rb_99 • rb_99
0 votes
3 replies
1.2K views
How to get reference lines haplotype path from PHG
haplotype phg reference
updated by lcj34 lcj34 • written by zx • zx
0 votes
1 reply
864 views
SNPSift countRef() on a VCF with missing values
snpsift
written by FJK • FJK
0 votes
0 replies
1.1K views
News: Webinar: "Integrated analysis of single-cell data across technologies, modalities, and perturbations" by Rahul Satijia (author of Seurat)
integrated-analysis seurat single-cell
updated by Ram Ram • written by Claire Watson • Claire Watson
0 votes
8 replies
2.8K views
How to find transcription factors list?
genes tf
updated by gglim • gglim • written by Tiara • Tiara
0 votes
8 replies
3.7K views
Interaction analysis using DESeq while adjusting for covariates.
deseq2 interaction rna-seq
updated by Thomas Neff • Thomas Neff • written by Sumit Paliwal • Sumit Paliwal
0 votes
1 reply
1.6K views
Forum: Looking for opinions on the MSc Computational Biology and Bioinformatics program at the University of Göttingen
masters germany
updated by GenoMax GenoMax • written by adina • adina
2 votes
7 replies
2.3K views
Does PRS distribution of target data should follow gaussian distribution?
polygenic-risk-score prs gwas
updated by Ram Ram • written by bubgoose • bubgoose
0 votes
3 replies
1.3K views
How to Convert 10x BCL Files to FASTQ Without a Sample Sheet Using Only Run Report Information?
bcl2fastq
updated by Ram Ram • written by Divya • Divya
0 votes
5 replies
2.0K views
Strand-specific quantification of RNA-seq data without strand-aware mapping
rna-seq yeast
updated by Carlo Yague Carlo Yague • written by tdsone • tdsone
0 votes
5 replies
1.9K views
Warning in Denovo Genome Assembly via SPADes
assembly spades fungi illumina
updated by Joe Joe • written by SomeOne • SomeOne
0 votes
0 replies
672 views
News: Online course: Conservation Genomics
snps populationgenomics conservationgenomics inbreeding
written by Physalia-courses Physalia-courses
0 votes
0 replies
810 views
GenVisR to generate waterfall plot with clinical data: Waterfall plot is not annotating the clinical data
mutation genvisr waterfall-plot oncoplot r
updated by Ram Ram • written by tanbiswas6 • tanbiswas6
1 vote
1 reply
853 views
EviGENE and BUSCO
busco evigene
updated by Mensur Dlakic Mensur Dlakic • written by momo • momo
0 votes
4 replies
1.4K views
FDA approved Biomarker database access
fda database biomarker
written by ijarne • ijarne
1 vote
3 replies
2.3K views
Am I getting TPM correct from tcga?
tpm tcgabiolinks tcga
updated by Ram Ram • written by Znow • Znow
0 votes
1 reply
1.2K views
Generating Hits files for BlobTools
blobtools uniprot
updated by jtorre28 • jtorre28 • written by Takuma • Takuma
0 votes
2 replies
984 views
genomics graphs in R
cnv
updated by bhumm • bhumm • written by mimarcelape • mimarcelape
0 votes
3 replies
1.3K views
VCFtools indels/SNP treatment
variants vcftools
updated by Jeremy Leipzig Jeremy Leipzig • written by draccident • draccident
0 votes
1 reply
900 views
Error in "Per Tile Sequence Quality"
illumina novaseqx genome-assembly fastqc
updated by Ram Ram • written by SomeOne • SomeOne
0 votes
6 replies
4.4K views
convert csv to fasta format using python
python
updated by Ram Ram • written by Abdellrhmanakl • Abdellrhmanakl
0 votes
3 replies
1.1K views
Comparing two BAM files for variant calling
ngs variant bam
updated by GenoMax GenoMax • written by Yogesh • Yogesh
0 votes
0 replies
552 views
Understanding the transcript version comparison in the ncbi webside
ncbi
written by ManuelDB ManuelDB
0 votes
7 replies
2.7K views
Super enhancers
enhancers
updated by Ram Ram • written by Oburah • Oburah
2 votes
4 replies
3.3K views
Saccharomyces cerevisiae - mapping against transcriptome
salmon transcriptome hisat2 featurecounts yeast
updated by tdsone • tdsone • written by yeast_rnaseq • yeast_rnaseq
0 votes
0 replies
815 views
Tool: geneviewer - Gene Cluster Visualizations in R
r clusterplot genome arrowmaps microbial-genetics
written by n.s.j.vandervelden • n.s.j.vandervelden
0 votes
4 replies
1.9K views
Alternative gap introduced when comparing insertion/deletion results between minimap2 and STAR2
star insertion minimap2 alignment deletion
written by peterhuang319 • peterhuang319
1 vote
2 replies
1.0K views
Is it acceptable to combine RNA-seq datasets?
rna-seq data-mining
written by imraandixon • imraandixon
1 vote
4 replies
2.1K views
Statistical test to compare cell type proportions in scrnaseq data
compositional-analysis scrna-seq
written by sarahmanderni sarahmanderni
0 votes
6 replies
2.0K views
Is there a way to quickly calculate the nodes' average coverage of variation graph from the read alignment file (.gam, .json) ?
vg
written by Wenhai • Wenhai
0 votes
2 replies
767 views
Are there any resources for converting large lists of non-model genes into human orthologs?
gene-ontology
written by Ronin • Ronin
0 votes
1 reply
682 views
PCR design and genome build compatibility
pcr primer genome-build
updated by Ram Ram • written by laith.moushib • laith.moushib
1 vote
0 replies
1.3K views
Blog: Sequencing by Synthesis on the Illumina NovaSeqXTM Series
novaseqx
updated by GenoMax GenoMax • written by Novogene • Novogene
2 votes
1 reply
1.4K views
Job: Seeking remote internship/job
remote europe
updated by colindaven colindaven • written by giulia.cosenza • giulia.cosenza
0 votes
4 replies
1.4K views
Fetch protein information of genes in a gene list
protein gene
updated by Ram Ram • written by CTLong • CTLong
0 votes
1 reply
2.5K views
Seurat Wrappers old version installation
seurat
written by Long • Long
1 vote
7 replies
2.7K views
GG Sankey plot - plot that does not show any flow between columns
ggplot2 sankey-plot r go
updated by zx8754 zx8754 • written by ijarne • ijarne
0 votes
7 replies
2.4K views
Download SRR by parallel and fastq dump with a weird problem
scrna-seq linux parallel
written by diqixiaoyaoer • diqixiaoyaoer
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