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0 votes
4 replies
2.2K views
How to find up-regulated and down-regulated genes after GEO2R analysis of a dataset
geo2r
updated by Nat.Nataren 10 • | written by Nimra 0
0 votes
4 replies
1.6K views
Ubuntu 24.10 crash
ubuntu
written by Luca 0
1 vote
4 replies
2.7K views
Hmisc Package error
r hmisc
written by abseq 1
0 votes
0 replies
470 views
Improving Gene Matching for CIBERSORT Deconvolution with Monaco Reference Matrix in Bulk RNA-Seq
rna-seq deconvolution
written by chunglee13 0
0 votes
4 replies
1.4K views
Looking for R package to plot amino acid change in the viral each protein domains
r ggplot2
written by G.S 6
0 votes
0 replies
463 views
How to get human-macaque homologues table from UCSC?
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written by Vullnet 0
0 votes
2 replies
1.5K views
error in CIBERSORTx
cibersortx
updated by Ram 4.5K • | written by Emilio Luis 0
0 votes
0 replies
396 views
Freebayes VCF Post-Calling Filter Optimization: Schizophrenia Gene Panel Insights
vcf
written by Lukas 13
0 votes
1 reply
849 views
fastp error in adapter or primer trimming
ngs fastp trimmomatic
updated by Ram 4.5K • | written by microorganism_001 3
0 votes
1 reply
785 views
Would anyone have the Tax4Fun2 Script?
tax4fun2
updated by Ram 4.5K • | written by Petrônio 0
0 votes
1 reply
892 views
Differential expression bias in Seurat
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updated by jared.andrews07 1.9K • | written by sleepystudent 0
0 votes
5 replies
1.6K views
whole genome seq for Gazelle - assemble mitochondria
mammals mitochondrial-genome
written by m90 3
0 votes
1 reply
847 views
Question on heterozygosity
heterozygosity population-genetics
updated by Ram 4.5K • | written by Lemonhope 1
0 votes
2 replies
6.6K views
Filtering seurat object
seurat scrna
written by marco.barr 22
0 votes
4 replies
2.0K views
What is the difference between Enrichr and ShinyGO? Which one is the best?
biotools enrichr shinygo
written by mr.onkology 0
0 votes
3 replies
1.5K views
htseq, stringtie, featurecounts all not working on nanopore direct RNA
stringtie minimap2 htseq quantification nanopore
updated by colindaven 844 • | written by CL 0
0 votes
0 replies
713 views
News: Two weeks left to apply for the Science & SciLifeLab Prize For Young Scientists
science early scilifelab career prize
written by Matthias Zepper 524
0 votes
0 replies
688 views
CARD RGI BWT issues [W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped
rgi card
written by laujihen 0
0 votes
2 replies
975 views
presigned URL in score-client
icgc
written by Javier 0
0 votes
1 reply
1.3K views
Creating a Single-Cell Signature Matrix for Bulk RNA-seq Deconvolution
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updated by Ram 4.5K • | written by Lloyd98 0
0 votes
0 replies
1.1K views
Job: PhD position: Deciphering molecular mechanisms of acute kidney injury (AKI) to chronic kidney disease (CKD) transition
python ckd omics drug-development
written by D4office 0
0 votes
0 replies
566 views
FRASER error
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updated by zx8754 1.2K • | written by smanzano250800 0
0 votes
0 replies
382 views
Calculating Change Scores for Longitudinal RNA-Seq Data
change-score delta rna-seq
updated by Ram 4.5K • | written by jari.karppinen 0
0 votes
3 replies
1.1K views
Any recommended way to view scRNAseq results in an interactive format?
rna-seq single-cell
written by Pei 26
0 votes
1 reply
1.6K views
How to open AlphaFold .pkl files
pkl alphafold
updated by Mensur Dlakic 3.0K • | written by fvasquez 0
0 votes
4 replies
1.8K views
Upward Sloping P Value Distribution in ATAC-seq Analysis
atac-seq deseq2 edger limma
updated by Devon Ryan 10K • | written by jbern 0
2 votes
0 replies
743 views
Job: Postdoc Opportunity in Bioinformatics at Northwestern University (Research on Human Pregnancy and Autoimmunity)
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updated by Ram 4.5K • | written by DJ 2
0 votes
4 replies
2.3K views
UCSC Genome Browser Custom Track Blank
customtrack ucsc chipseq
updated by Maximilian Haeussler 179 • | written by Daniel 4
2 votes
5 replies
2.4K views
Visualizing human genomic loci
genome visualization
updated by brianlee 1 • | written by James 3
1 vote
11 replies
3.8K views
Reporting of multimapping reads by STAR and Hisat2
star hisat2 multimapper
updated by rfran010 174 • | written by predeus 212
0 votes
6 replies
1.5K views
Chip-Seq and DEGS
chip-seq
written by Zeke 0
0 votes
3 replies
1.2K views
Strange peaks in normalized FPKM data
gene-expression fpkm
written by Cathy 0
1 vote
3 replies
1.3K views
single cell RNA sequencing and mitochondrial percent
mitochondria scrnaseq
updated by Zhenyu Zhang 130 • | written by kayah 2
0 votes
2 replies
1.0K views
NA is p-valueas & p.adj in DESeq2
fdr deg p-value deseq2
written by Milly 0
0 votes
2 replies
1.2K views
Nucleotide diversity and TajimaD from SNPs
gatk tajimad vcf
updated by Ram 4.5K • | written by BioD 0
0 votes
4 replies
2.1K views
How to find genes with altered CNV from CNVkit output?
wes cnv wgs ngs
written by ahmad mousavi 80
0 votes
0 replies
539 views
Next Steps for NUMTs Identification and Analysis
pacbio numts mtdna
written by hashim.rana11 4
0 votes
3 replies
1.2K views
HOW TO REDUCE GENES FOR CYTOSCAPE
cytoscape genes tf
updated by Ram 4.5K • | written by Tiara 0
0 votes
2 replies
1.0K views
Converting GRCh38 30× 1000G data to GRCh37
bam 1000genomes alignment
updated by Ram 4.5K • | written by devenvyas 77
0 votes
2 replies
861 views
retrieve assembly accession from genome accession
assembly genomics
written by Cynthia14159 0
0 votes
5 replies
4.0K views
Is there a way to install Python version 2 on Mac with M3 chips?
ngs python
updated by gernophil 15 • | written by xiaoleiusc 14
0 votes
0 replies
670 views
News: Online course: RNAseq data analysis with R/Bioconductor
r bioconductor rna-seq differential-expression-analysis
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
1 reply
893 views
whole genome seq for Gazelle - assemble mitochondria
wgs dna reference
updated by colindaven 844 • | written by m90 3
0 votes
0 replies
515 views
NO sequence type of bacteria revealed using mlst package
assembly sequencing genomics
written by Mohamed Samir 3
0 votes
3 replies
1.3K views
Where does cellranger log its estimates for the input to DETECT_COUNT_CHEMISTRY?
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updated by ATpoint 9.1K • | written by mk 31
0 votes
1 reply
887 views
ChIPseeker annotation
chipseeker chip-seq
updated by Nitin Narwade 168 • | written by sk_24 0
0 votes
4 replies
2.9K views
How to install dependencies in conda environment in Google colab?
conda gpu multiomics google-colab single-cell
updated by Michael Dondrup 5.6K • | written by KABILAN 13
1 vote
0 replies
797 views
Scale independence plots in WGCNA
network scale-free-model wgcna
updated by Ram 4.5K • | written by Harini 1
1 vote
0 replies
593 views
How do I integrate metabolic and microbiome data?
microbiome
updated by Ram 4.5K • | written by Priyal 1
4 votes
4 replies
1.4K views
Post-calling vcf filtration
vcf
written by Lukas 13
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