This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
3 replies
1.4K views
Only one node generated after using decision tree model on training data set
machine-learning decision-tree
written by Mohamed Samir • Mohamed Samir
0 votes
1 reply
693 views
glmGamPoi offset matrix details
glmgampoi rna-seq scrna-seq
updated by ATpoint ATpoint • written by Alec • Alec
0 votes
1 reply
1.2K views
Unable to fetch fasta files of contigs using Edirect in Linux
edirect ncbi whole-genome-sequencing
updated by Ram Ram • written by Mohamed Samir • Mohamed Samir
1 vote
2 replies
1.6K views
Job: Consultant to update a Snakemake workflow with the new Kubernetes executor plugin for Snakemake 8
kubernetes devops executor aws snakemake
updated by ATpoint ATpoint • written by jonrkarr jonrkarr
0 votes
2 replies
1.1K views
Statistical analysis of quantified proteomic data: ctrl vs. mut
statistics proteomics
updated by ATpoint ATpoint • written by C. Ryder • C. Ryder
0 votes
3 replies
1.1K views
Create table of major/minor alleles per SNP, per individual
genotyping allele wgs
updated by Ram Ram • written by eaabbott0 • eaabbott0
0 votes
2 replies
1.1K views
Advice for analyzing SnpEff results
snpsift snpeff vcf
updated by Ram Ram • written by ekirsch • ekirsch
0 votes
2 replies
3.4K views
Should I normalize and scale my data again after doing subset(seu, idents=" ") in Seurat?
normalization seurat scrna-seq
written by ev97 • ev97
0 votes
0 replies
888 views
advice for wattersons theta calculation using vcf file
diversity vcf theta
written by ekirsch • ekirsch
0 votes
4 replies
2.0K views
Histogram of normalized counts for each cell type
seurat single-cell
written by odi • odi
0 votes
3 replies
2.1K views
filter reads based on mapped length
samtools reads bam
updated by John Marshall John Marshall • written by marco.barr • marco.barr
0 votes
1 reply
828 views
Computer modelling of metformin effect on mitochondria
metformin modelling simulation
updated by GenoMax GenoMax • written by Maryna • Maryna
6 votes
2 replies
1.3K views
Tool: HGNC Version Control
git control symbols version gene
written by barslmn • barslmn
0 votes
2 replies
788 views
Public dataset for tracking Doctors' treatment histories
database
updated by ATpoint ATpoint • written by Unk_Student • Unk_Student
1 vote
0 replies
610 views
RNA-Seq vs DNA-Seq variant calling
benchmark dna-seq rna-seq giab vcf
written by Esraa • Esraa
0 votes
4 replies
1.4K views
RNAseq .fastq files on multiple flowcells, how to proceed
rna-seq illumina novaseq fastq
written by christiantd • christiantd
0 votes
0 replies
688 views
ABBA-BABA Analysis for Identifying Ancestral Contributors in Plant Species Evolution
orthofinder d-suite abba-baba phylogenetics
written by alexis.groppi • alexis.groppi
0 votes
0 replies
523 views
How to find the Full chromosome details using RefSeq ID from Bio Projects section of NCBI portal
plasmids refseq
updated by Ram Ram • written by AKANKSHA • AKANKSHA
0 votes
0 replies
495 views
Help Needed with Finding Homologous Genes between Rat and Human for Dataset Integration
biomart homologous-genes
updated by Ram Ram • written by dxj294 • dxj294
0 votes
0 replies
590 views
Calculating GQ for VCF file
vcf gq
updated by Ram Ram • written by Tsin-Lau • Tsin-Lau
0 votes
6 replies
1.7K views
Trimmomatic error: Exception in thread "main" java.lang.NumberFormatException
linux windows trimmomatic
updated by Ram Ram • written by Gilad • Gilad
0 votes
2 replies
861 views
miRNA analysis workflow from total RNA Sequencing
mirna-seq
written by mobina • mobina
0 votes
4 replies
1.5K views
Error using parasiteMart
wormbaseparasite ensembl parasite_mart wormbase biomart
updated by GenoMax GenoMax • written by Emily • Emily
0 votes
2 replies
836 views
Human sequence data mapped to mouse genome
rna-seq
written by sh • sh
3 votes
5 replies
2.1K views
Adjusting for covariates such as duration of diabetes, age, sex and BMI
limma covariates voom
updated by Gordon Smyth Gordon Smyth • written by sukeshinik5 • sukeshinik5
0 votes
1 reply
701 views
Clusterprofiler with M. tuberculosis genome
clusterprofiler
updated by bio_info • bio_info • written by Maurice • Maurice
0 votes
10 replies
2.9K views
CutNtag normalization without spike in
cutntag csaw chipseq diffbind
written by gamma.jian • gamma.jian
0 votes
7 replies
3.1K views
gene expression normaliztion
edger rna-seq gene-expression
updated by Gordon Smyth Gordon Smyth • written by bioinfo1994 • bioinfo1994
0 votes
0 replies
740 views
How VEP BAM Edit works?
variant vep
written by bharata1803 bharata1803
0 votes
0 replies
549 views
Automated analysis of amplicon sequence datasets from multiple FASTQ files
dada2 amplicon otu asv
written by Bio_12 • Bio_12
0 votes
9 replies
4.7K views
pbmm2 alignment of long reads
long-reads pbmm2 alignment
written by priya.bmg • priya.bmg
0 votes
1 reply
1.2K views
GATK GRCh38 genome version for biomaRt
biomart
updated by GenoMax GenoMax • written by ramiro.barrantes • ramiro.barrantes
0 votes
12 replies
5.1K views
mergeCutHeight in WGCNA and correlation type for correct module identification
mergecutheight correlation wgcna categorigal
written by seta seta
0 votes
4 replies
1.5K views
How to construct Mitochondrial Haplotype network?
mitochondrial haplotype pacbio network mtdna
written by hashim.rana11 • hashim.rana11
0 votes
1 reply
1.2K views
Need Help with Normalizing Western Blot Data with Inter-Gel Variability
western-blot
updated by rfran010 • rfran010 • written by Anto • Anto
0 votes
2 replies
1.5K views
Error while using pbsv discover, "ERROR: map::at"
bam pacbio pbsv
written by wch2123 • wch2123
0 votes
0 replies
750 views
News: Online course: Introduction to CRISPR
crispr genome-editing evolution
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
3 replies
1.1K views
To extract uniques SNPs froma. multisample VCF file
vcf
written by sam • sam
0 votes
1 reply
1.1K views
Converting gtf file from Ensembl to the UCSC Ensembl format (ensGene.txt format)
gtf ensembl ucsc annotation
updated by sam • sam • written by rahu • rahu
0 votes
3 replies
1.0K views
Convert whole genome mRNA file from NCBI to gff file.
a
updated by sam • sam • written by nish_laa • nish_laa
0 votes
6 replies
1.7K views
Finding scRNA-seq datasets of healthy human ovaries
python geo single-cell rna
updated by Ram Ram • written by AlexStar • AlexStar
0 votes
5 replies
1.7K views
DESeq2_ How to Account for the Expression Levels of a Specific Gene?
differential-expression-analysis deseq2
updated by jared.andrews07 jared.andrews07 • written by BioNovice247 • BioNovice247
0 votes
5 replies
2.9K views
Subset cells in Seurat data based on reads and gene expression
seurat
updated by Ram Ram • written by bgbs • bgbs
1 vote
4 replies
4.3K views
Tool: Neurosnap: Platform for making access to bioinformatic tools as simple as possible
protein docking rna transcriptome toxicity
updated by Kevin • Kevin • written by keaun • keaun
0 votes
0 replies
535 views
From plink to GeneHunter format
linkage-analysis
updated by Ram Ram • written by lucas_ • lucas_
0 votes
2 replies
836 views
Comparative analyses of non coding genetic sequences
non-coding-sequences evolution
updated by Ram Ram • written by José • José
1 vote
2 replies
1.1K views
Shallow sequencing is not a random subsample of deep sequencing
illumina scrna-seq
written by jockbanan jockbanan
0 votes
4 replies
2.1K views
Volcano plot with different font size for gene labels
rna-seq enhancedvolcano volcano-plot
updated by Trivas • Trivas • written by Assa Yeroslaviz Assa Yeroslaviz
0 votes
0 replies
500 views
Online tool for Kaplar-Meier Plot for bone and lung free-metastases survival
survival kaplar-meier-plot free-metastases
updated by Ram Ram • written by matteo.levorato • matteo.levorato
0 votes
7 replies
2.6K views
Overlapping cut and tag H3k27 peaks and ATAC-Seq peaks
atac-seq cutntag
updated by Ram Ram • written by new • new
Recent Votes
Recent Locations
Recent Replies