More posts like this
-
Yeast reference-based genome assembly
written by amy967107 0Hello everyone! I'm trying to perform a reference-based genome assembly using Nanopore sequencing data. The gene originates from yeast, presumably from the genus Rhodotorula, and …
-
CNV Analysis and Visualisation
written by jia 0Hi everyone, I’m new to bioinformatics and would like to visualize my CNV data using Circos. However, I haven’t been able to find any helpful …
-
Is there a way to write a genbank file in R?
written by Jack 0Hi All, I'm trying to edit some genbank file fields in R (removing whitespace from gene feature tags) and write the updated output to a …
-
Pipelines for CAZenzymes, COG, KO, MetaCyc, Pfam and TIGRFAM analysis
written by Petrônio 0From metabarcoding data, a metagenomic prediction analysis was performed using the MicFunPred pipeline. The output results are tables containing the abundances of CAZenzymes, COG, KO, …
-
KEGG pathway enrichment analysis in Zea mays with R
written by letizia.ottaviani 0Hello everybody, I'm trying to perform KEGG enrichment analysis with my list of DEG from DESeq2 in R. I'm trying to use cluster profiler but …
-
How to download Accession List from NCBI on CLI?
written by Cam 0Hi! I'm an undergraduate working on a Python script to streamline some processes for my advisor, and my program relies on an Accession List input …
-
Are there wrappers for blastdb_aliastool, blastdbcmd in Biopython Blast module? Any alternatives?
written by bsmith4133 4I'm trying to make a gene pipeline using the standalone Blast application, and I've been using the Bio.Blast.Applications module. In the BioPython documentation, there doesn't …
-
IsoEM2 installation: permission denied problem
written by mar77 4I'm trying to install IsoEM2 using the instructions in the README file, by cloning the git repository and then trying to run the install script …
-
Adding environmental data to ordination in R
written by dannyw2594 0Hello Everyone, I have recently completed an analysis of Illumina 16S amplicon data with Qiime2. I am working in R on the beta-diversity and I'm …
-
Gene expression abundance data
written by kresimir.krizanovic 0Hi, Could anyone please point me to where I could download some gene expression or abundance data (I'm not sure what is the difference between …
See Installation: Tax4Fun2 package are not found and github repository is not maintained anymore
Use at your own risk since the links are not for the original repo.