Hello!
I wish to know if anyone could recommend some way to view/examine scRNAseq results in an interactive format, where we could easily look up the expression of specific genes in the different cell type. I am going to present such results to my PI who made this suggestion. I am considering just using seurat on my R studio but wondering if there is any more popular way?
Thank you!
1 answer
10x makes loupe browser available to view analyzed data https://www.10xgenomics.com/support/software/loupe-browser/latest
You can use https://www.10xgenomics.com/support/software/loupe-browser/latest/tutorials/introduction/lb-louper to create the necessary output starting with your Seurat object. That could be a simple/free option for your PI.
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you can make a Shiny app
Yes, and with the help of ShinyCell - https://github.com/SGDDNB/ShinyCell
Cheers!