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0 votes
0 replies
639 views
News: ONLINE COURSE – Genome Assembly and Annotation (GAAA01)
annotation genome assembly genomics
updated by Ram Ram • written by oliverhooker oliverhooker
0 votes
0 replies
858 views
News: ONLINE COURSE – Introduction to Metabarcoding and Metagenomics Analysis (IMAM01)
metabarcoding metagenomics
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
0 votes
2 replies
1.0K views
News: ONLINE COURSE – Metabarcoding Pipelines for Eukaryotic Communities
metabarcoding eukaryotes
updated by Ram Ram • written by oliverhooker oliverhooker
0 votes
4 replies
1.3K views
Error: Encountered internal Bowtie 2 exception (#1)
bowtie2
updated by GenoMax GenoMax • written by gabriel • gabriel
0 votes
2 replies
922 views
Error installing ACTIONet
r
written by sidrah.maryam • sidrah.maryam
0 votes
1 reply
745 views
Using SSL (Secure Sockets Layer) for PHG
ssl phg
updated by lcj34 lcj34 • written by chakhouski.artur • chakhouski.artur
0 votes
5 replies
2.8K views
Calling variants/SNP for single-cell RNA-seq data
snp scrnaseq
updated by yura.grabovska • yura.grabovska • written by QX • QX
0 votes
1 reply
1.4K views
difficulties in using HADDOCK 2.4 for protein-ligand docking
ligand
updated by 래건 • 래건 • written by barbarainb • barbarainb
1 vote
0 replies
865 views
News: "Introduction to Deep Learning for Biologists" - Online Course (30 Sep - 4 Oct 2024)
deep-learning machine-learning python cnn
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
0 replies
864 views
Split Seurat assay into two assays
r seurat
updated by Ram Ram • written by solo.albif • solo.albif
0 votes
3 replies
1.1K views
Fastq with 2 presence of adapter sequences
fastqc
updated by GenoMax GenoMax • written by Armando • Armando
0 votes
7 replies
1.7K views
Bulk RNA-Seq Data That's Only Tumors (No Normal/Reference)?
rna-seq dea
updated by Ram Ram • written by James • James
1 vote
1 reply
835 views
Ranking the GSEA Results
log2fc p-value deseq2 gsea
updated by dthorbur dthorbur • written by V_Vibes • V_Vibes
0 votes
1 reply
940 views
Does it make sense to do hdWGCNA following the DEG analysis?
deg wgcna single-cell
updated by edoardofilippi1998 • edoardofilippi1998 • written by paria • paria
0 votes
0 replies
400 views
Define outliers in proportional difference in scRNAseq analysis
scrna-seq
updated by Ram Ram • written by Yuzu776 • Yuzu776
0 votes
2 replies
1.3K views
Understanding dimred in scater for scRNASeq
singlecellexperiment fastmnn scater scrnaseq
updated by jared.andrews07 jared.andrews07 • written by sp • sp
0 votes
2 replies
1.1K views
Monocle3 - gene expression dot plot (ggplot2 equivalent)
monocle3 ggplot2 data-visualization
updated by gglim • gglim • written by seattlescientist_01 • seattlescientist_01
2 votes
0 replies
714 views
Blog: Investigating male X heterozygosity in short read sequencing
heterozygosity nextflow sequencing chrx
written by barslmn • barslmn
0 votes
1 reply
1.8K views
Bismark Report Merging
methylation bismark wbgs
updated by Ram Ram • written by maxrhighsmith • maxrhighsmith
0 votes
3 replies
1.0K views
How to carry out cell deconvolution GIVEN known cell proportions already?
deconvolution
written by Rashid • Rashid
1 vote
0 replies
606 views
News: Course: Analysing Biodiversity Through Time and Space using R
r biodiversity-data
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
1 reply
712 views
miRDeep2 problem with miRNA ID's
mirna mirdeep2
updated by GenoMax GenoMax • written by Ornella Stefanía • Ornella Stefanía
0 votes
3 replies
1.2K views
Create a GenBank file for a novel organism
pathway genome assembly annotation
written by scarface • scarface
0 votes
1 reply
827 views
Understanding Discrepancies in Deduplication Rates Between Forward and Reverse Reads in Metagenomic Data
metagenomics deduplicate
updated by Ram Ram • written by Stiofan • Stiofan
0 votes
3 replies
1.0K views
Changing unknown transcript identifiers in RNASeq data to gene names
rnaseq
updated by i.sudbery i.sudbery • written by jasminestaples1 • jasminestaples1
0 votes
1 reply
1.4K views
Downloading 10X Spatial Transcriptomic Data from GEO
geo spatial-trascriptomics single-cell
updated by GenoMax GenoMax • written by biocellbio • biocellbio
0 votes
1 reply
968 views
Prokka annotation
prokka
updated by Joe Joe • written by Cancerplse • Cancerplse
0 votes
0 replies
548 views
How to adjust covariates with RRBS data?
covariates rrbs
updated by Ram Ram • written by Dff045 • Dff045
0 votes
2 replies
1.1K views
No peaks detected in chipseq analysis-macs3
chipseq
updated by Darked89 Darked89 • written by bioinfo_ga • bioinfo_ga
1 vote
3 replies
1.6K views
Increase the width of one plot in multiple plots
r ggplot2
updated by zx8754 zx8754 • written by G.S • G.S
0 votes
2 replies
1.1K views
Infer UMI from fastq files
bcl2fastq transcriptome rna-seq umi
written by ATRX ATRX
0 votes
2 replies
2.4K views
Why does DESeq2 give negative log2 fold change in treatment vs control for some genes when normalized counts are higher in treatment? (Already checked my condition factors are correct)
deseq2
written by mropri mropri
2 votes
1 reply
2.3K views
Tool: Just released VEBA 2.0 in Nucleic Acids Research, a modular genome-resolved metagenomics/metatranscriptomics software suite that can handle prokaryotes, (micro)eukaryotes, and viruses
metatranscriptomics metagenomics microbiome veba
written by O.rka O.rka
0 votes
3 replies
2.0K views
Is it possible to access controlled TCGA data through TCGA Biolinks in R?
r gdc rstudio tcga
updated by Ram Ram • written by Destiny • Destiny
0 votes
2 replies
977 views
Correcting a lack of gaps in bwa aln mapping of unpaired reads
bwa
written by shpak.max • shpak.max
0 votes
0 replies
528 views
unable to produce cnr files
cnvkit
updated by Ram Ram • written by ww22runner • ww22runner
0 votes
11 replies
6.3K views
Errors with GSEA using clusterProfiler
clusterprofiler gsea
written by bio_info • bio_info
0 votes
4 replies
1.2K views
Counting Specific Genetic Variants in IGV Using Fixed Read Data
variants igv
written by safeassli • safeassli
0 votes
0 replies
575 views
CNNScoreVariants - GATK 4.5.0.0 error
cnnscorevariants gatk
updated by Ram Ram • written by dophuochuy94 • dophuochuy94
0 votes
3 replies
1.2K views
Somatic variants in different tumor states with no healthy control samples
somatic-variants
updated by Ram Ram • written by jaime alvarez • jaime alvarez
1 vote
8 replies
3.4K views
How to use Anaconda/Miniconda more effectively ?
anaconda miniconda
updated by H.Hasani H.Hasani • written by SomeOne • SomeOne
0 votes
2 replies
1.2K views
Minimum Spanning Tree for SNPs
mst matrix snp distance bowtie2
written by davidmaimoun • davidmaimoun
0 votes
2 replies
810 views
genome assembly for a pathogens
assembly
updated by dthorbur dthorbur • written by tubs • tubs
0 votes
2 replies
798 views
Error while validating metadata in MG-RAST
gut microbiome metadata mg-rast
written by biobio • biobio
0 votes
2 replies
1.4K views
Reformatting Fastq to Fasta for Metagenomic Analysis
metagenomics fasta fastq
updated by colindaven colindaven • written by echolley • echolley
0 votes
0 replies
551 views
News: Course on Python for Biologists (online, July 8th-11th)
ngs python-programming
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
0 replies
692 views
Annotation differences annotatr and minfi getAnnotation
annotatr minfi 450k annotation
updated by GenoMax GenoMax • written by altuda • altuda
0 votes
5 replies
1.7K views
low Successfully assigned alignments
featurecounts rnaseq
updated by Carlo Yague Carlo Yague • written by Srujana • Srujana
0 votes
5 replies
1.5K views
DNA methylation data and P values
r p-values dna-methylation
updated by Ram Ram • written by maryak • maryak
0 votes
2 replies
1.8K views
File conversion: a2m To fasta
a2m fasta a3m
updated by Mensur Dlakic Mensur Dlakic • written by Meto • Meto
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