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0 votes
2 replies
2.1K views
Statistical analysis for proteomic data with more than one effect in the model
proteomic statistics model two effects
updated by GenoMax 16K • | written by TCC 0
0 votes
4 replies
1.9K views
Findind the annotation file of the Illumina Infinium HumanMethylation450k array
illumina r
updated by yura.grabovska 94 • | written by Chris K 1
0 votes
2 replies
1.1K views
"Guidance Needed for Analyzing Quantitative Protein Data Using Perseus Software"
mass-spectrometry perseus
updated by Ram 4.5K • | written by Bioinformatics_16 0
0 votes
4 replies
1.7K views
Where can I download dbsnp in hg19?
dnsnp hg19
written by _quantum_girl_ 8
0 votes
12 replies
2.4K views
Creating a sample specific directory on the go while using -wget command to download the files
wget ncbi
updated by Ram 4.5K • | written by Hrituraj 0
0 votes
0 replies
594 views
Compute percentage normalization of gene expression in diseased samples vs healthy controls
statistics rna-seq deseq2
written by Dataminer 277
0 votes
4 replies
1.4K views
indexing the drosophila genome for kallisto
index kallisto
written by gogeni5529 9
5 votes
4 replies
19K views
nr database Diamond
alignment protein
updated by SilentGene 12 • | written by Dave Th 6
0 votes
2 replies
1.5K views
ascp Session stop time out
ena aspera
updated by GenoMax 16K • | written by tomas4482 43
0 votes
7 replies
2.8K views
Before doing pseudobulk, should we get rid of genes that are only expressed in a small number of cells?
deseq2 scrnaseq pseudobulk
written by mropri 17
1 vote
7 replies
2.2K views
How to scrap PlasmoDB website
plasmodb rvest tidyr
written by rohitsatyam102 95
1 vote
5 replies
1.5K views
Comparing two RNAseq runs for the same samples
bulk normalisation rnaseq
updated by BioinfGuru 214 • | written by fluentin44 2
0 votes
0 replies
820 views
Job: Open PhD position focusing on omics data integration and visualisation
topological_data_analysis data_visualization omics visual_analytics
written by jan.aerts 0
0 votes
0 replies
745 views
News: ONLINE COURSE – Reproducible and collaborative data analysis with R (RACR03)
r reproducible data analysis
updated by GenoMax 16K • | written by oliverhooker 14
0 votes
4 replies
1.4K views
Identify and count gaps in sam/bam files
samtools
updated by Mark 173 • | written by shpak.max 8
0 votes
0 replies
814 views
Passing list of genes to celltypist
de singlecell cellannotation celltypist python
written by Bioinformatics_begginner 2
0 votes
2 replies
1.4K views
Atac-seq shift single-end data
single-end atac-seq
updated by ATpoint 9.1K • | written by sarahmanderni 13
0 votes
2 replies
1.2K views
PROVEAN input for stop codon
variant provean
written by Vitis 256
0 votes
0 replies
758 views
Combining different studies from recount for differential gene expression analysis
combat-seq batch deseq2 recount
updated by ATpoint 9.1K • | written by MieszkoL 1
2 votes
14 replies
6.8K views
Forum: Good Bioinformatics Jokes/Puns?
bioinformatics
updated by zx8754 1.2K • | written by echolley 2
0 votes
0 replies
1.7K views
Job: Computational Biology PhD Position: Computational drug screening and synthetic lethality drug repurposing to identify novel therapeutic options for prostate cancer
python graphtheory prostate omics cancer
written by D4office 0
0 votes
0 replies
749 views
how to do screening of differentially expressed genes DEGs using network analyst tool?
networkanalyst tool degs
written by Nimra 0
0 votes
2 replies
1.1K views
Statistical test or method to test relationship between nearby genes and CpG sites
r dna-methylation gene-expression
updated by Ram 4.5K • | written by user911111111 0
0 votes
3 replies
2.2K views
Why does my Hi-C contact map show large regions making little to no contact?
bwa-mem2 hi-c pretextmap
updated by july_arinez 0 • | written by Winter 0
2 votes
2 replies
1.3K views
Merged analysis of microarray datasets using R
r meta-analysis microarray
updated by yura.grabovska 94 • | written by ruth 2
0 votes
0 replies
758 views
ATAC-seq +4 -5 shift in single-end setting before motif analysis
single-end atacseq
written by sarahmanderni 13
0 votes
1 reply
768 views
best tools for bacterial wgMLST
wgmlst
updated by Mark 173 • | written by blur 30
0 votes
0 replies
562 views
Cox model HR interpretation with percentage
cox r
written by Nona 9
0 votes
1 reply
1.1K views
Using SwissProt vs NR database for PSSM generation
pssm swissprot nr
updated by b.contreras.moreira 49 • | written by jet 0
0 votes
1 reply
682 views
Test results did not meet expectations
kraken2
written by leisiru 0
1 vote
2 replies
865 views
What does evidence of batch effect in bulk rnaseq look like?
batches sva surrogates
written by BioinfGuru 214
0 votes
2 replies
1.2K views
STAR Index error
star
updated by dsull 781 • | written by Sajaa 0
0 votes
1 reply
863 views
Remove variants from vcf file does not work
bcftools vcf vcftools
updated by Ram 4.5K • | written by 8armed 2
0 votes
5 replies
3.4K views
How to account for total number of cells when aggregating for pseudobulk?
pseudobulk
updated by ATpoint 9.1K • | written by mropri 17
1 vote
9 replies
5.5K views
Why it is not use UMIs for RNA-seq?
rna-seq umis scrna-seq
updated by microbe77 3 • | written by Rafael Soler 126
0 votes
1 reply
901 views
PCR Primer Design Related
design pcr primer
updated by GenoMax 16K • | written by Bhavya 0
0 votes
2 replies
1.0K views
Count and filter sites with degenarate bases in VCF files
vcf degenerate-bases bisulfite-sequencing
updated by Jeremy Leipzig 2.3K • | written by ja569116 0
0 votes
2 replies
1.0K views
How can I import an unindexed human gtf file in IGV?
igv
written by bioinfo 19
0 votes
0 replies
712 views
Extract alignment between two samples from a GFA?
graph-genome vg cactus
updated by Ram 4.5K • | written by cmdcolin 448
0 votes
0 replies
764 views
News: Course on Genome Assembly using Pacbio data
genome-assembly pacbio hi-c long-reads
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
2 replies
950 views
Detecting compound heterozygous
haplotype heterozygous
written by _quantum_girl_ 8
0 votes
2 replies
813 views
running psvcp_v1.01 pipeline on example data aiming to construct linear pangenome
psvcp_v1.01 pangenome
written by Bushra Bibi 8
0 votes
0 replies
657 views
Confusion about StringTie
stringtie
updated by Ram 4.5K • | written by DGTool 30
0 votes
0 replies
583 views
pseudobulk DESeq2 design matrix
deseq2 design-matrix batch-correction
updated by Ram 4.5K • | written by HK 4
0 votes
2 replies
692 views
How to install `_license` package for Python v3.8.1 in Conda environment?
python
updated by Ram 4.5K • | written by KABILAN 13
0 votes
3 replies
1.2K views
Issues with longQC
qc long-read
updated by GenoMax 16K • | written by SethJ 0
0 votes
3 replies
1.9K views
What is the difference between the taxonomy classification and binning in metagenomic?
binning taxonomy metagenomic
written by QuotoAstro 0
0 votes
2 replies
1.6K views
Zero FPKM values after stringtie quantification
hisat2 stringtie arabidopsis rna-seq fpkm
updated by i.sudbery 2.3K • | written by Pedro 2
0 votes
13 replies
2.9K views
Nextflow process not executing
star-mapping. nextflow
written by myoui3122010 3
0 votes
2 replies
1.3K views
CNVkit heatmap RAM and Runtime
aws cnvkit cnv
updated by Ram 4.5K • | written by Conor 2
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