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0 votes
4 replies
2.3K views
UCSC Genome Browser Custom Track Blank
customtrack ucsc chipseq
updated by Maximilian Haeussler Maximilian Haeussler • written by Daniel • Daniel
2 votes
5 replies
2.3K views
Visualizing human genomic loci
genome visualization
updated by brianlee • brianlee • written by James • James
1 vote
11 replies
3.8K views
Reporting of multimapping reads by STAR and Hisat2
star hisat2 multimapper
updated by rfran010 • rfran010 • written by predeus predeus
0 votes
6 replies
1.5K views
Chip-Seq and DEGS
chip-seq
written by Zeke • Zeke
0 votes
3 replies
1.2K views
Strange peaks in normalized FPKM data
gene-expression fpkm
written by Cathy • Cathy
1 vote
3 replies
1.3K views
single cell RNA sequencing and mitochondrial percent
mitochondria scrnaseq
updated by Zhenyu Zhang Zhenyu Zhang • written by kayah • kayah
0 votes
2 replies
1.0K views
NA is p-valueas & p.adj in DESeq2
fdr deg p-value deseq2
written by Milly • Milly
0 votes
2 replies
1.2K views
Nucleotide diversity and TajimaD from SNPs
gatk tajimad vcf
updated by Ram Ram • written by BioD • BioD
0 votes
4 replies
2.0K views
How to find genes with altered CNV from CNVkit output?
wes cnv wgs ngs
written by ahmad mousavi ahmad mousavi
0 votes
0 replies
529 views
Next Steps for NUMTs Identification and Analysis
pacbio numts mtdna
written by hashim.rana11 • hashim.rana11
0 votes
3 replies
1.2K views
HOW TO REDUCE GENES FOR CYTOSCAPE
cytoscape genes tf
updated by Ram Ram • written by Tiara • Tiara
0 votes
2 replies
1.0K views
Converting GRCh38 30× 1000G data to GRCh37
bam 1000genomes alignment
updated by Ram Ram • written by devenvyas devenvyas
0 votes
2 replies
846 views
retrieve assembly accession from genome accession
assembly genomics
written by Cynthia14159 • Cynthia14159
0 votes
5 replies
3.9K views
Is there a way to install Python version 2 on Mac with M3 chips?
ngs python
updated by gernophil • gernophil • written by xiaoleiusc xiaoleiusc
0 votes
0 replies
664 views
News: Online course: RNAseq data analysis with R/Bioconductor
r bioconductor rna-seq differential-expression-analysis
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
1 reply
890 views
whole genome seq for Gazelle - assemble mitochondria
wgs dna reference
updated by colindaven colindaven • written by m90 • m90
0 votes
0 replies
508 views
NO sequence type of bacteria revealed using mlst package
assembly sequencing genomics
written by Mohamed Samir • Mohamed Samir
0 votes
3 replies
1.3K views
Where does cellranger log its estimates for the input to DETECT_COUNT_CHEMISTRY?
cellranger sequencing single-cell
updated by ATpoint ATpoint • written by mk mk
0 votes
1 reply
876 views
ChIPseeker annotation
chipseeker chip-seq
updated by Nitin Narwade Nitin Narwade • written by sk_24 • sk_24
0 votes
4 replies
2.9K views
How to install dependencies in conda environment in Google colab?
conda gpu multiomics google-colab single-cell
updated by Michael Dondrup Michael Dondrup • written by KABILAN • KABILAN
1 vote
0 replies
779 views
Scale independence plots in WGCNA
network scale-free-model wgcna
updated by Ram Ram • written by Harini • Harini
1 vote
0 replies
591 views
How do I integrate metabolic and microbiome data?
microbiome
updated by Ram Ram • written by Priyal • Priyal
4 votes
4 replies
1.4K views
Post-calling vcf filtration
vcf
written by Lukas • Lukas
0 votes
0 replies
580 views
Good books or review papers on mendelian randomization and eQTLs?
eqtl randomization mendelian
written by _quantum_girl_ • _quantum_girl_
0 votes
4 replies
1.6K views
Two different RNA sequencing sets that have gene names set up differently - how to normalize?
r rna-sequencing
written by awsk • awsk
0 votes
1 reply
745 views
Help with phylogenetic analysis
phylogenetic-analysis genome
updated by Mensur Dlakic Mensur Dlakic • written by KaTi • KaTi
0 votes
2 replies
1.2K views
How to install BioNano Access tool to visualize Bionano optical map outputs?
bionano genome optical-map
updated by eebloom • eebloom • written by BioinfoBee • BioinfoBee
0 votes
0 replies
1.2K views
Job: Senior Bioinformatics Engineer
bioinformatics-engineer simons-foundation
updated by Ram Ram • written by vanessa vanessa
0 votes
2 replies
2.5K views
CellCycleScoring error
seurat cell-cycle scrna
written by marco.barr • marco.barr
1 vote
4 replies
1.3K views
bedtools -F minimum overlap, possible BUG ?
bedtools rna-seq
updated by Ram Ram • written by difraiadomenico • difraiadomenico
0 votes
2 replies
2.1K views
Understanding Differing results between STAR and kallisto
quantification star kallisto rna-seq
updated by rfran010 • rfran010 • written by Assa Yeroslaviz Assa Yeroslaviz
0 votes
1 reply
971 views
QUALITY SCORE OF human vcf file genearted through GATK
gatk phred variant-calling
written by ashaneev07 • ashaneev07
0 votes
1 reply
1.0K views
lncRNA-miRNA interaction
mirna lncrna
updated by onco-research • onco-research • written by ziyan • ziyan
0 votes
0 replies
610 views
News: Online Course: Generalized Linear Mixed Models in R (Oct 14-18)
r mixed-models gllm
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
0 replies
784 views
Detection of germinal CNVs with CNVkit
cnvkit cnv
updated by Ram Ram • written by g.spirito • g.spirito
0 votes
2 replies
1.1K views
Removal of low read counts prior to DESeq2?
deseq2 rna-seq
written by robert.flynn.21 • robert.flynn.21
0 votes
3 replies
1.8K views
ENA browser fasta endpoint returns 500, even on their own example
ena fasta
updated by Michael Dondrup Michael Dondrup • written by Kevin • Kevin
0 votes
2 replies
1.1K views
Problem in RNASeq data analysis
transcriptomics rnaseq
written by shwetamgr1 • shwetamgr1
1 vote
3 replies
4.2K views
unmapped reads with pysam
pysam
updated by Ram Ram • written by grant.hovhannisyan grant.hovhannisyan
0 votes
11 replies
5.0K views
How to extract unmapped mate for specific reads using pysam or other module in python?
pysam
updated by i.sudbery i.sudbery • written by Xi • Xi
0 votes
5 replies
1.4K views
Unable to retrieve the "Assembly method" of an assembly using Edirect in the terminal
assembly sequencing genomics
written by Mohamed Samir • Mohamed Samir
0 votes
1 reply
1.4K views
What tools are there to quantify m6A methylation of Nanopore bam files?
m6a methylation nanopore rna
updated by Ram Ram • written by smb51095 • smb51095
0 votes
0 replies
659 views
How are .cmap files generated using Bionano?
bionano map genome assemblies
written by BioinfoBee • BioinfoBee
0 votes
9 replies
28K views
VCF To FASTA
next-gen genetic genome
updated by LauferVA LauferVA • written by Myo Naung • Myo Naung
5 votes
4 replies
1.8K views
How to identify cell identities in mixed scRNA-seq using mutational signatures from bulk RNA-seq
rna-seq scrna-seq
written by Chilly • Chilly
0 votes
0 replies
421 views
Progeria samples DNA WGBS
progeria
updated by Ram Ram • written by Ivan • Ivan
0 votes
0 replies
700 views
Extracting SNPs from UKBB TOPMED imputation
nexus biobank dna topmed uk
written by Harry • Harry
0 votes
1 reply
880 views
Comparing Gene Expression Before and After Treatment Using Nanopore Sequencing Data
sequencing normalisation nanopore
written by Dim • Dim
0 votes
6 replies
1.5K views
Sorting repetitive Gene Ontology entries in one line
gene-ontology
updated by Ram Ram • written by resug • resug
0 votes
0 replies
795 views
News: ONLINE COURSE – Introduction to Single Cell Analysis (ISCA01)
trailmaker single-cell rna-seq scrna-seq
updated by Ram Ram • written by oliverhooker oliverhooker
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