More posts like this
-
I have doubts regarding conducting meta-analysis of differentially expressed genes
written by Rohan •I have generated differential expression gene (DEG) lists separately for multiple OSCC (oral squamous cell carcinoma) datasets, microarray data processed with limma and RNA-Seq data …
-
How to filter out non-plant KEGG pathways in KEGG enrichment?
written by Ben Nestor •Hi all, I'm doing KEGG enrichment of a non-model plant species. I annotated genes of this species using blastKOALA with taxonomy group set to Viridiplantae …
-
Novel protein isoform - how to investigate tissue and tissue expression using databases?
written by MAR •Dear Community, I am a cell-biologist and not very familiar with bioinformatics... I have cloned a novel isoform/transcript variant of a protein and my advisor …
-
Gene expression comparison of Cancer and Normal tissue
written by evocanres •I have a basic question about RNAseq normalisation while comparing cancer/tumor tissue expression data to normal tissue expression. Assuming that cancer cells will be highly …
-
Tools for finding tissue specific gene expression "markers"?
written by arvchi •I have a count matrix of gene expression data for several samples, derived from heart tissue (pig). I want to confirm that the gene expression …
-
meta analysis of result of RNA-Seq data analysis
written by hassan giahi •hi all i have a problem for meta analysis of RNA-Seq defferential expression data that generated by CLC Genomic Workbench . in the result of …
-
Obtaining all age related expression data from GEO
written by Tom •I would like to conduct a gene expression meta-analysis between age and particular ageing-related phenotypes in human, mouse and rat. To construct my data set, …
-
Is there a database which gives meta-level information of mutation(both nuclueotide and AA change)…
written by ivivek_ngsI would like to know if there is a database of pathways where a single pathway can give meta level information of nt change and …
-
Query regarding transcriptome analysis
written by simar-coasab •<p>I have whole transcriptome data from three different plant species. From Differential gene expression analysis (DGE), I got zero expression value (read count and FPKM …
-
co-expression of genes in normal and cancer
written by kanwarjagI am looking for co expression pattern of few selected genes in specific cancer vs normal patients samples. It can be either RNA seq or …
Put yourself into the readers perspective. "My cake does not look nice despite I follow the receipe" => How do you expect anybody to help here?