This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Interpreting cNMF with 2 equivalent best ranks

Having ran cNMF on my single-cell data, I get the following k-estimation plot.

enter image description here

It would appear that both k=8 and k=10 are highly stable. Is the typical tactic here to select the highest rank k where you have good stability?

python cnmf

0 answers

No answers yet.

Log in to answer this question.