Methylation profiling

Hi,

I would like a get a Methylation Profile map of regions ( like LTR, LINE) in the genome. I have bed file having methylation percentage of each regions.

I am looking to generate similar plot as in the image below

enter image description here

methylation profiling

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updated 9.7 years ago by Ram

• written 9.7 years ago by jk •

Transposons or TE's can be found using UCSC's Table Browser and then choosing 'RepeatMasker' as the table.

After that you can load up the information on a visualization browser like IGV.

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written 9.7 years ago by Sinji

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