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Sinji
Sinji
Reputation:
3,220
Joined:
10.4 years ago
Last seen:
8.6 years ago
Location:
UT Southwestern Medical Center

I am a research assistant at the University of Texas Southwestern Medical Center that only recently began working in computational biology. Most of my work involves the analysis of sequencing data such as ChIP-seq, RNA-seq, and MNase-seq and its visualization. 

Latest posts by user
1 vote
1 reply
0 views
Comment: C: stringtie cannot recognize Gencode GTF
written by Sinji Sinji
2 votes
0 replies
0 views
Comment: C: bedops -u does not work properly
written by Sinji Sinji
0 votes
1 reply
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Comment: C: bedops -u does not work properly
written by Sinji Sinji
0 votes
1 reply
0 views
Comment: C: bedops -u does not work properly
written by Sinji Sinji
0 votes
0 replies
0 views
Answer: A: Detect LINE1 element in NGS data
written by Sinji Sinji
0 votes
0 replies
0 views
Comment: C: How to extract variable nucleotide regions from a list of contigs
written by Sinji Sinji
1 vote
1 reply
0 views
Comment: C: nextflow implementation of grape pipeline
written by Sinji Sinji
1 vote
2 replies
0 views
Comment: C: How Gro-seq identify enhancer RNA?
written by Sinji Sinji
1 vote
1 reply
0 views
Comment: C: How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
written by Sinji Sinji
0 votes
0 replies
0 views
Comment: C: Identifying the orientation of a CTCF motif?
written by Sinji Sinji
0 votes
7 replies
7.8K views
Identifying the orientation of a CTCF motif?
ctcf chip-seq
updated by simon.vanheeringen simon.vanheeringen • written by Sinji Sinji
1 vote
0 replies
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Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
written by Sinji Sinji
7 votes
3 replies
0 views
Answer: A: Snakemake vs. Nextflow: strengths and weaknesses
written by Sinji Sinji
2 votes
0 replies
0 views
Comment: C: Chip-seq peak annotation [Chipseeker]
written by Sinji Sinji
1 vote
1 reply
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Comment: C: STAR installation make error
written by Sinji Sinji
1 vote
0 replies
0 views
Answer: A: Peak ident near highly expressed genes
written by Sinji Sinji
0 votes
0 replies
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Answer: A: chip-seq analysis and peak annotation
written by Sinji Sinji
3 votes
1 reply
0 views
Comment: C: Is annotation of enhancers to nearest gene pointless?
written by Sinji Sinji
6 votes
1 reply
0 views
Answer: A: Is annotation of enhancers to nearest gene pointless?
written by Sinji Sinji
0 votes
0 replies
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Comment: C: BBMap: Number of reads out does not add up to number of reads in
written by Sinji Sinji
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