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0 votes
0 replies
546 views
Cox model HR interpretation with percentage
cox r
written by Nona • Nona
0 votes
1 reply
1.1K views
Using SwissProt vs NR database for PSSM generation
pssm swissprot nr
updated by b.contreras.moreira • b.contreras.moreira • written by jet • jet
0 votes
1 reply
676 views
Test results did not meet expectations
kraken2
written by leisiru • leisiru
1 vote
2 replies
856 views
What does evidence of batch effect in bulk rnaseq look like?
batches sva surrogates
written by BioinfGuru BioinfGuru
0 votes
2 replies
1.2K views
STAR Index error
star
updated by dsull dsull • written by Sajaa • Sajaa
0 votes
1 reply
853 views
Remove variants from vcf file does not work
bcftools vcf vcftools
updated by Ram Ram • written by 8armed • 8armed
0 votes
5 replies
3.3K views
How to account for total number of cells when aggregating for pseudobulk?
pseudobulk
updated by ATpoint ATpoint • written by mropri mropri
1 vote
9 replies
5.5K views
Why it is not use UMIs for RNA-seq?
rna-seq umis scrna-seq
updated by microbe77 • microbe77 • written by Rafael Soler • Rafael Soler
0 votes
1 reply
889 views
PCR Primer Design Related
design pcr primer
updated by GenoMax GenoMax • written by Bhavya • Bhavya
0 votes
2 replies
1.0K views
Count and filter sites with degenarate bases in VCF files
vcf degenerate-bases bisulfite-sequencing
updated by Jeremy Leipzig Jeremy Leipzig • written by ja569116 • ja569116
0 votes
2 replies
1.0K views
How can I import an unindexed human gtf file in IGV?
igv
written by bioinfo • bioinfo
0 votes
0 replies
703 views
Extract alignment between two samples from a GFA?
graph-genome vg cactus
updated by Ram Ram • written by cmdcolin cmdcolin
0 votes
0 replies
750 views
News: Course on Genome Assembly using Pacbio data
genome-assembly pacbio hi-c long-reads
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
2 replies
942 views
Detecting compound heterozygous
haplotype heterozygous
written by _quantum_girl_ • _quantum_girl_
0 votes
2 replies
804 views
running psvcp_v1.01 pipeline on example data aiming to construct linear pangenome
psvcp_v1.01 pangenome
written by Bushra Bibi Bushra Bibi
0 votes
0 replies
645 views
Confusion about StringTie
stringtie
updated by Ram Ram • written by DGTool • DGTool
0 votes
0 replies
576 views
pseudobulk DESeq2 design matrix
deseq2 design-matrix batch-correction
updated by Ram Ram • written by HK • HK
0 votes
2 replies
690 views
How to install `_license` package for Python v3.8.1 in Conda environment?
python
updated by Ram Ram • written by KABILAN • KABILAN
0 votes
3 replies
1.2K views
Issues with longQC
qc long-read
updated by GenoMax GenoMax • written by SethJ • SethJ
0 votes
3 replies
1.9K views
What is the difference between the taxonomy classification and binning in metagenomic?
binning taxonomy metagenomic
written by QuotoAstro • QuotoAstro
0 votes
2 replies
1.6K views
Zero FPKM values after stringtie quantification
hisat2 stringtie arabidopsis rna-seq fpkm
updated by i.sudbery i.sudbery • written by Pedro • Pedro
0 votes
13 replies
2.8K views
Nextflow process not executing
star-mapping. nextflow
written by myoui3122010 • myoui3122010
0 votes
2 replies
1.2K views
CNVkit heatmap RAM and Runtime
aws cnvkit cnv
updated by Ram Ram • written by Conor • Conor
0 votes
4 replies
2.2K views
How to find up-regulated and down-regulated genes after GEO2R analysis of a dataset
geo2r
updated by Nat.Nataren • Nat.Nataren • written by Nimra • Nimra
0 votes
4 replies
1.6K views
Ubuntu 24.10 crash
ubuntu
written by Luca • Luca
1 vote
4 replies
2.7K views
Hmisc Package error
r hmisc
written by abseq • abseq
0 votes
0 replies
465 views
Improving Gene Matching for CIBERSORT Deconvolution with Monaco Reference Matrix in Bulk RNA-Seq
rna-seq deconvolution
written by chunglee13 • chunglee13
0 votes
4 replies
1.4K views
Looking for R package to plot amino acid change in the viral each protein domains
r ggplot2
written by G.S • G.S
0 votes
0 replies
459 views
How to get human-macaque homologues table from UCSC?
homologues ucsc genome alignment gene
written by Vullnet • Vullnet
0 votes
2 replies
1.5K views
error in CIBERSORTx
cibersortx
updated by Ram Ram • written by Emilio Luis • Emilio Luis
0 votes
0 replies
394 views
Freebayes VCF Post-Calling Filter Optimization: Schizophrenia Gene Panel Insights
vcf
written by Lukas • Lukas
0 votes
1 reply
831 views
fastp error in adapter or primer trimming
ngs fastp trimmomatic
updated by Ram Ram • written by microorganism_001 • microorganism_001
0 votes
1 reply
773 views
Would anyone have the Tax4Fun2 Script?
tax4fun2
updated by Ram Ram • written by Petrônio • Petrônio
0 votes
1 reply
885 views
Differential expression bias in Seurat
markers seurat scrna-seq single-cell
updated by jared.andrews07 jared.andrews07 • written by sleepystudent • sleepystudent
0 votes
5 replies
1.5K views
whole genome seq for Gazelle - assemble mitochondria
mammals mitochondrial-genome
written by m90 • m90
0 votes
1 reply
835 views
Question on heterozygosity
heterozygosity population-genetics
updated by Ram Ram • written by Lemonhope • Lemonhope
0 votes
2 replies
6.6K views
Filtering seurat object
seurat scrna
written by marco.barr • marco.barr
0 votes
4 replies
2.0K views
What is the difference between Enrichr and ShinyGO? Which one is the best?
biotools enrichr shinygo
written by mr.onkology • mr.onkology
0 votes
3 replies
1.5K views
htseq, stringtie, featurecounts all not working on nanopore direct RNA
stringtie minimap2 htseq quantification nanopore
updated by colindaven colindaven • written by CL • CL
0 votes
0 replies
704 views
News: Two weeks left to apply for the Science & SciLifeLab Prize For Young Scientists
science early scilifelab career prize
written by Matthias Zepper Matthias Zepper
0 votes
0 replies
678 views
CARD RGI BWT issues [W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped
rgi card
written by laujihen • laujihen
0 votes
2 replies
962 views
presigned URL in score-client
icgc
written by Javier • Javier
0 votes
1 reply
1.2K views
Creating a Single-Cell Signature Matrix for Bulk RNA-seq Deconvolution
rna-seq signature deconvolution single-cell
updated by Ram Ram • written by Lloyd98 • Lloyd98
0 votes
0 replies
1.1K views
Job: PhD position: Deciphering molecular mechanisms of acute kidney injury (AKI) to chronic kidney disease (CKD) transition
python ckd omics drug-development
written by D4office • D4office
0 votes
0 replies
557 views
FRASER error
bioconductor jaccard fraser r
updated by zx8754 zx8754 • written by smanzano250800 • smanzano250800
0 votes
0 replies
379 views
Calculating Change Scores for Longitudinal RNA-Seq Data
change-score delta rna-seq
updated by Ram Ram • written by jari.karppinen • jari.karppinen
0 votes
3 replies
1.1K views
Any recommended way to view scRNAseq results in an interactive format?
rna-seq single-cell
written by Pei Pei
0 votes
1 reply
1.6K views
How to open AlphaFold .pkl files
pkl alphafold
updated by Mensur Dlakic Mensur Dlakic • written by fvasquez • fvasquez
0 votes
4 replies
1.8K views
Upward Sloping P Value Distribution in ATAC-seq Analysis
atac-seq deseq2 edger limma
updated by Devon Ryan Devon Ryan • written by jbern • jbern
2 votes
0 replies
733 views
Job: Postdoc Opportunity in Bioinformatics at Northwestern University (Research on Human Pregnancy and Autoimmunity)
rna-seq scrna-seq
updated by Ram Ram • written by DJ • DJ
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