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0 votes
2 replies
882 views
Merino sheep genetic map
recombination genetic-map
written by PKW 11
0 votes
0 replies
545 views
can i use cmapM(matlab) in windows OS?
converting 3 4 5 cmap level
written by kim 0
0 votes
1 reply
1.2K views
Transferring Seurat Cluster Colours for scVelo analysis
seurat scvelo velocity scrnaseq
updated by antonioggsousa 344 • | written by Megan 0
0 votes
1 reply
876 views
Asking the meaning of the reference sequence
bowtie2
updated by GenoMax 16K • | written by Pallondyle 0
0 votes
2 replies
1.3K views
Hisat2 mapping stringency
hisat2
written by MA 1
0 votes
0 replies
1.1K views
Job: PhD and Postdoc Positions in AI-driven Drug Discovery at the University of Florida
computational-biology phd aidd postdoc
written by AIDD 0
0 votes
14 replies
3.1K views
convert list to fasta format
python
updated by Ram 4.5K • | written by pinheirofabiano 14
0 votes
0 replies
508 views
qsea makeTable()
bioconductor qsea r maketable
updated by zx8754 1.2K • | written by Sophia 0
0 votes
11 replies
3.8K views
Conversion of Gene Name to Ensembl ID
ensembl rna-seq
updated by LauferVA 497 • | written by Amirhossein 0
1 vote
17 replies
4.7K views
RNA STAR and trimming
trimming star rna-seq rna
updated by GenoMax 16K • | written by casio 1
0 votes
8 replies
4.0K views
How to reassign the orientation of clusters in pheatmap
r pheatmap heatmap
written by Meghan.T 1
0 votes
1 reply
827 views
Training a Mini Calico/Borzoi Model using cardiomyocyte RNA-Seq, ATAC-Seq, and WGBS
borzoi wgbs calico rna-seq atac
updated by Oleczkaff 0 • | written by Cameron.walker9900 0
0 votes
0 replies
457 views
small scale of perb_score in the output from scRank and order of the rank
scrank
updated by Ram 4.5K • | written by alwayshope 4
0 votes
10 replies
2.0K views
Extracting unmapped reads from a sam file and converting to fastq
samtools
updated by Ram 4.5K • | written by drmodupe06 0
0 votes
0 replies
698 views
News: Course: RADseq data analysis using Stacks (online)
rad-seq genomics stacks phylogenomics population
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
3 replies
1.1K views
Mageck NEST cannot find control genes/sgRNAs
python mageck crispr-screen
updated by GenoMax 16K • | written by liz.b 0
0 votes
0 replies
652 views
How do I bin my individually assembled metagenome samples
metagenome binning
updated by Ram 4.5K • | written by prateekshettys 0
0 votes
4 replies
2.5K views
Multiple same UMI's mapped to the same cell with different sequence
10x umi bam scrnaseq barcode
written by zbidav 3
0 votes
0 replies
766 views
Minfi - bumphunter M and Beta values
minfi methylation bumphunter
written by Eren 0
0 votes
2 replies
911 views
Get SYMBOL using mapIds with T2T genome ?
t2t
written by Picasa 71
0 votes
1 reply
754 views
HUB gene selection
hub-gene
updated by edoardofilippi1998 0 • | written by deepak 0
0 votes
0 replies
575 views
CNV calling with complex genomic background
cnv
written by 雨辰 0
2 votes
4 replies
2.3K views
Forum: Resume building projects to break into bioinformatics?
job-hunting career-change
updated by BioinfGuru 214 • | written by DdogBoss 7
0 votes
1 reply
958 views
combine two density plots in one plot
r ggplot2 density_plot
updated by zx8754 1.2K • | written by G.S 6
0 votes
1 reply
1.4K views
Trinotate generates an empty report, only headers and no data inside
trinotate metatranscriptome docker
updated by Ricardo De Jesus Ehectal 0 • | written by jway 0
2 votes
0 replies
422 views
merge-methcounts sites not sorted error
methpipe methylation
updated by Ram 4.5K • | written by Connor 2
0 votes
0 replies
773 views
Linear Mixed Model for Differential Gene Expression in Single-Cell RNAseq with Batch Effects
mast differential-expression lmer
updated by Ram 4.5K • | written by nhaus 44
0 votes
1 reply
2.8K views
Xenium multi sample data
xenium batch-effect annotation
updated by Ram 4.5K • | written by Omics data mining 26
0 votes
0 replies
796 views
ggplot2 geom_density() density value estimates can be greater than 1?
r tpm density ggplot
written by Prawesh 0
0 votes
0 replies
718 views
Job: PhD position Integrated Modeling
modeling gene-regulation machine-learning
updated by Ram 4.5K • | written by a.d.j.vandijk 0
0 votes
2 replies
863 views
gene prediction
potato gene-prediction qingshu9
written by zhu 0
0 votes
0 replies
568 views
generating a genome reference fasta file
fasta bam reference
updated by Ram 4.5K • | written by erl1977 6
0 votes
6 replies
2.4K views
More than 90% of variants were failed to match, using LiftoverVcf of Picard.
liftover liftovervcf picard
written by yoshidakoki 0
0 votes
2 replies
841 views
MAXLFQ peptide data analysis
chemoproteomics proteomics maxlfq
written by SHN 4
1 vote
4 replies
2.4K views
Minimap2 mapping problem
amplicon reference minimap2 mapping haplotype
written by Maximilian 1
0 votes
0 replies
748 views
Clustering single-cell CNV data
r clustering infercnv cnv scrna
written by yura.grabovska 94
0 votes
2 replies
1.5K views
BUSCO did not find any match. Retraining did not complete correctly. BUSCO analysis failed!
augustus pipeline maker annotation busco
updated by GenoMax 16K • | written by Sony Nguyen 2
0 votes
0 replies
698 views
How to identify the strongest eQTL for a gene in a specific tissue using GTEX?
eqtl gtex gtexv8
written by AAP 0
0 votes
3 replies
1.0K views
Filterbytile.sh - Exception in thread "main" java.lang.RuntimeException: Can't read file ...
illumina filterbytile java rna
updated by GenoMax 16K • | written by duplessisantzel 0
0 votes
5 replies
2.1K views
Eukaryotic genome Assembly
genome-assembly masurca
updated by Ram 4.5K • | written by manaswiniparija3 6
0 votes
0 replies
393 views
sounDMR DMR analysis package in R
soundmr asap dmr_analysis
written by praddyumnapdm 0
0 votes
1 reply
1.3K views
Deconvolution of RNAseq (bulk) from skin samples
rnaseq skin-references deconvolution
updated by Wangering Hedgie 0 • | written by BlueSky 1
0 votes
0 replies
626 views
DNA methylation and plot manhattan
dna_methylation plot manhattan
written by fatii0ma 0
1 vote
8 replies
2.6K views
Differential analysis of enrichment results
statistics enrichment
written by Aspire 43
0 votes
2 replies
1.9K views
Forum: scRNA-seq: Do people eliminate housekeeping genes for the sake of increasing algorithmic efficiency (and this speed)?
housekeeping-genes scrna-seq
updated by Ram 4.5K • | written by Daniel 0
0 votes
5 replies
2.5K views
best way to submit hpc job using snakemake
snakemake
written by QX 9
0 votes
1 reply
1.0K views
Batch correction between cancer only data and normal only data
methylation batch-effect
updated by Ram 4.5K • | written by Eren 0
0 votes
0 replies
455 views
Different methods of data normalisation produce different cluster markers
r dge seurat
updated by zx8754 1.2K • | written by ria.dashyan 0
1 vote
0 replies
631 views
Removal of samples with weird log-CPM distribution or voomWithQualityWeights?
voomwithqualityweights limma pca outliers
written by t.fortunato.asquini 1
0 votes
1 reply
1.3K views
DESeq2 sizeFactor for Bacterial RNASeq
normalization bacteria rrna rnaseq
updated by swbarnes2 1.5K • | written by iXuan 0
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