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Omics data mining
Omics data mining
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260 (Trusted)
Joined:
12.5 years ago
Last seen:
8 months ago
Location:
Germany

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Latest posts by user
0 votes
3 replies
1.5K views
How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
gatk vcf liftover
updated by Ram 4.5K • | written by Omics data mining 26
0 votes
1 reply
2.8K views
Xenium multi sample data
xenium batch-effect annotation
updated by Ram 4.5K • | written by Omics data mining 26
0 votes
0 replies
924 views
cnetplot enrichment graph to cytoscape
clusterprofiler cnetplot enrichplot
written by Omics data mining 26
0 votes
1 reply
0 views
Comment: Comment: Spatial transcriptome analysis
written by Omics data mining 26
0 votes
0 replies
3.6K views
from seurat to scanpy data conversion and re-scaling
transctiptome eurat scanpy conversion spatial
written by Omics data mining 26
0 votes
1 reply
1.9K views
Right assay and slot for the extraction of normalized data after "sct normalization" and "anchor based integration"
single normalization integration cell sct anchor seurat based
updated by jv 187 • | written by Omics data mining 26
0 votes
1 reply
1.1K views
pipeline for correlation of RNASeq and Methylation data
rnaseq methylation correlation normalization data
updated by Papyrus 310 • | written by Omics data mining 26
0 votes
1 reply
1.5K views
Customizable pvalue scales in clusterprofiler
clusterprofiler
updated by rpolicastro 1.3K • | written by Omics data mining 26
0 votes
0 replies
0 views
Comment: Comment: clusterprofiler dotplot facet_grid plot based on ONTOLOGY
written by Omics data mining 26
0 votes
2 replies
2.4K views
clusterprofiler dotplot facet_grid plot based on ONTOLOGY
dotplot clusterprofiler facet_grid
written by Omics data mining 26
0 votes
0 replies
766 views
normalization and integration of two independent single cell cohorts
single-cell batch-effect normalization
updated by Ram 4.5K • | written by Omics data mining 26
0 votes
1 reply
2.3K views
normalized score for SpatialFeaturePlot
spatial transcriptome normalization integration seurat
updated by jv 187 • | written by Omics data mining 26
2 votes
1 reply
0 views
Comment: Comment: How to include spatial coordinate data into anndata within scanpy
written by Omics data mining 26
0 votes
0 replies
0 views
Comment: Comment: Visualization of Enrichment score for spatial 10x visium samples
written by Omics data mining 26
0 votes
2 replies
1.6K views
Visualization of Enrichment score for spatial 10x visium samples
visium transctiptome 10x enrichment scores spatial
written by Omics data mining 26
0 votes
3 replies
1.4K views
deconvolution of spatial transcriptome
deconvolution spatial transcriptome
updated by mmorillo 0 • | written by Omics data mining 26
0 votes
1 reply
3.3K views
change color and scale in SpatialFeaturePlot
clustering seurat spatial-transcriptome
updated by Ram 4.5K • | written by Omics data mining 26
0 votes
0 replies
2.3K views
error plotting spatial data in scanpy
scanpy spatial-transcriptome
updated by Ram 4.5K • | written by Omics data mining 26
2 votes
0 replies
1.4K views
Input at BINDetect step (for TOBIAS pipeline) with multiple files
differential atac-seq tobias motifs
written by Omics data mining 26
0 votes
0 replies
0 views
Comment: Comment: error in pipeline installation dependent on numpy version 1.18.5
written by Omics data mining 26
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