This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Omics data mining
Omics data mining
Reputation:
260
Joined:
12.4 years ago
Last seen:
7 months ago
Location:
Germany

about me

Latest posts by user
0 votes
3 replies
1.5K views
How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
gatk vcf liftover
updated by Ram Ram • written by Omics data mining Omics data mining
0 votes
1 reply
2.7K views
Xenium multi sample data
xenium batch-effect annotation
updated by Ram Ram • written by Omics data mining Omics data mining
0 votes
0 replies
896 views
cnetplot enrichment graph to cytoscape
clusterprofiler cnetplot enrichplot
written by Omics data mining Omics data mining
0 votes
1 reply
0 views
Comment: Comment: Spatial transcriptome analysis
written by Omics data mining Omics data mining
0 votes
0 replies
3.6K views
from seurat to scanpy data conversion and re-scaling
transctiptome eurat scanpy conversion spatial
written by Omics data mining Omics data mining
0 votes
1 reply
1.9K views
Right assay and slot for the extraction of normalized data after "sct normalization" and "anchor based integration"
single normalization integration cell sct anchor seurat based
updated by jv jv • written by Omics data mining Omics data mining
0 votes
1 reply
1.1K views
pipeline for correlation of RNASeq and Methylation data
rnaseq methylation correlation normalization data
updated by Papyrus Papyrus • written by Omics data mining Omics data mining
0 votes
1 reply
1.5K views
Customizable pvalue scales in clusterprofiler
clusterprofiler
updated by rpolicastro rpolicastro • written by Omics data mining Omics data mining
0 votes
0 replies
0 views
Comment: Comment: clusterprofiler dotplot facet_grid plot based on ONTOLOGY
written by Omics data mining Omics data mining
0 votes
2 replies
2.4K views
clusterprofiler dotplot facet_grid plot based on ONTOLOGY
dotplot clusterprofiler facet_grid
written by Omics data mining Omics data mining
0 votes
0 replies
751 views
normalization and integration of two independent single cell cohorts
single-cell batch-effect normalization
updated by Ram Ram • written by Omics data mining Omics data mining
0 votes
1 reply
2.3K views
normalized score for SpatialFeaturePlot
spatial transcriptome normalization integration seurat
updated by jv jv • written by Omics data mining Omics data mining
2 votes
1 reply
0 views
Comment: Comment: How to include spatial coordinate data into anndata within scanpy
written by Omics data mining Omics data mining
0 votes
0 replies
0 views
Comment: Comment: Visualization of Enrichment score for spatial 10x visium samples
written by Omics data mining Omics data mining
0 votes
2 replies
1.6K views
Visualization of Enrichment score for spatial 10x visium samples
visium transctiptome 10x enrichment scores spatial
written by Omics data mining Omics data mining
0 votes
3 replies
1.4K views
deconvolution of spatial transcriptome
deconvolution spatial transcriptome
updated by mmorillo • mmorillo • written by Omics data mining Omics data mining
0 votes
1 reply
3.3K views
change color and scale in SpatialFeaturePlot
clustering seurat spatial-transcriptome
updated by Ram Ram • written by Omics data mining Omics data mining
0 votes
0 replies
2.3K views
error plotting spatial data in scanpy
scanpy spatial-transcriptome
updated by Ram Ram • written by Omics data mining Omics data mining
2 votes
0 replies
1.4K views
Input at BINDetect step (for TOBIAS pipeline) with multiple files
differential atac-seq tobias motifs
written by Omics data mining Omics data mining
0 votes
0 replies
0 views
Comment: Comment: error in pipeline installation dependent on numpy version 1.18.5
written by Omics data mining Omics data mining
Latest awards to user
TODO: Awards