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Visualization of Enrichment score for spatial 10x visium samples

Hello everyone

I have done spatial transcritpome analysis in seurat and identified clusters of interest. Next identified gene enrichment scores for set of features which gives value for each spot. I would like to display score at spot level as shown in figure 4D in following publication : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8494229/

I would appreciate all the suggestions

Thanks in advance

visium transctiptome 10x enrichment scores spatial
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written by Omics data mining Omics data mining

1 answer

You can easily do this type of plot using SpatialFeaturePlot from Seurat

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written by Nicolas Rosewick Nicolas Rosewick

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