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0 votes
3 replies
1.1K views
Fastest way to get rsid from SNP position
snp dbsnp annotation
updated by Pierre Lindenbaum Pierre Lindenbaum • written by _quantum_girl_ • _quantum_girl_
0 votes
6 replies
1.7K views
File format to view overlapping peaks on multiple separate tracks in IGV
ucsc genome igv browser
written by Anisur Rahman • Anisur Rahman
0 votes
5 replies
1.7K views
Pathway analysis for DGEList
kegg pathway_analysis go gene_expression dgelist
updated by BioinfGuru BioinfGuru • written by bioinfo1994 • bioinfo1994
0 votes
2 replies
1.1K views
vg giraffe handling of second vs. supplemental/split alignments, novel SVs, and associated MAPQ
vg
updated by Jordan M Eizenga • Jordan M Eizenga • written by Thomas • Thomas
0 votes
0 replies
595 views
Should I run SVA or not?
clustering sva batch
written by BioinfGuru BioinfGuru
0 votes
2 replies
1.4K views
SPADES output
contigs scaffolds output spades
written by san96 • san96
0 votes
3 replies
1.5K views
alphafold hpc large fasta file job
fasta hpc alpahfold prediction
written by Kayenat Sheikh • Kayenat Sheikh
0 votes
2 replies
1.2K views
How to obtain the names and chromosome position of all immunoglobulin genes from mouse mm10 assembly genome using ucsc?
ucsc-table-browser
updated by Ram Ram • written by Marino Max • Marino Max
0 votes
1 reply
971 views
Associations with small-ish patient clinical data with bulk RNA-seq expression
statistics ai rna-seq stats machine-learning
updated by BioinfGuru BioinfGuru • written by noodlejackson • noodlejackson
0 votes
2 replies
1.2K views
Help with complex Volcano Plot
ggplot2 volcano degs
written by jmannhei • jmannhei
0 votes
2 replies
902 views
A Linux server reports an error when processing RNA-seq data comparison
linux
updated by GenoMax GenoMax • written by 211122070082 • 211122070082
0 votes
2 replies
1.2K views
Programmatic JS ways to get interesting information about genes by symbol or accession ID
javascript metadata gene annotation
written by Alex Reynolds Alex Reynolds
0 votes
3 replies
1.3K views
gene ids do not have corresponding valid gene names kallisto bus tools
mapping kallisto bustools
updated by dsull dsull • written by naili mortadha • naili mortadha
0 votes
1 reply
1.2K views
Stranded cDNA libraries and genome mapping
cdna sequence strand
updated by rfran010 • rfran010 • written by BioStar55555 • BioStar55555
0 votes
5 replies
1.8K views
How can I get an allele count table from a .vcf file?
gatk calling variant vcf
updated by Jeremy Leipzig Jeremy Leipzig • written by mrk • mrk
0 votes
0 replies
507 views
Error in name duplicate for miRNA differential analysis
mirna differential-analysis
updated by Ram Ram • written by enola.missonnier • enola.missonnier
0 votes
4 replies
1.5K views
multiple response SRR URLs for the same service 's3'
geo accession ncbi
written by akar_ozan01 • akar_ozan01
0 votes
2 replies
1.2K views
bamCoverage --MNase error : function a paired end library is required.
deeptools
updated by GenoMax GenoMax • written by akh22 akh22
0 votes
2 replies
948 views
Rsubread with unexpected read order results
rsubread
updated by GenoMax GenoMax • written by thomas.heigl.ibk • thomas.heigl.ibk
0 votes
0 replies
594 views
Interpreting cNMF with 2 equivalent best ranks
python cnmf
written by yura.grabovska • yura.grabovska
2 votes
8 replies
6.0K views
Running fastqc in parallel
quality fastqc
updated by BioinfGuru BioinfGuru • written by pablo pablo
0 votes
2 replies
987 views
how to colorize snakemake editing text
snakemake
updated by Michael Dondrup Michael Dondrup • written by QX • QX
0 votes
0 replies
644 views
Low libsize of one sample after STAR+featureCounts pipeline w.r.t other samples
featurecounts star libsize dge edger
written by DYLAN NICO • DYLAN NICO
0 votes
2 replies
2.0K views
Statistical analysis for proteomic data with more than one effect in the model
proteomic statistics model two effects
updated by GenoMax GenoMax • written by TCC • TCC
0 votes
4 replies
1.8K views
Findind the annotation file of the Illumina Infinium HumanMethylation450k array
illumina r
updated by yura.grabovska • yura.grabovska • written by Chris K • Chris K
0 votes
2 replies
1.1K views
"Guidance Needed for Analyzing Quantitative Protein Data Using Perseus Software"
mass-spectrometry perseus
updated by Ram Ram • written by Bioinformatics_16 • Bioinformatics_16
0 votes
4 replies
1.7K views
Where can I download dbsnp in hg19?
dnsnp hg19
written by _quantum_girl_ • _quantum_girl_
0 votes
12 replies
2.4K views
Creating a sample specific directory on the go while using -wget command to download the files
wget ncbi
updated by Ram Ram • written by Hrituraj • Hrituraj
0 votes
0 replies
583 views
Compute percentage normalization of gene expression in diseased samples vs healthy controls
statistics rna-seq deseq2
written by Dataminer Dataminer
0 votes
4 replies
1.4K views
indexing the drosophila genome for kallisto
index kallisto
written by gogeni5529 • gogeni5529
5 votes
4 replies
19K views
nr database Diamond
alignment protein
updated by SilentGene • SilentGene • written by Dave Th • Dave Th
0 votes
2 replies
1.5K views
ascp Session stop time out
ena aspera
updated by GenoMax GenoMax • written by tomas4482 • tomas4482
0 votes
7 replies
2.7K views
Before doing pseudobulk, should we get rid of genes that are only expressed in a small number of cells?
deseq2 scrnaseq pseudobulk
written by mropri mropri
1 vote
7 replies
2.2K views
How to scrap PlasmoDB website
plasmodb rvest tidyr
written by rohitsatyam102 rohitsatyam102
1 vote
5 replies
1.5K views
Comparing two RNAseq runs for the same samples
bulk normalisation rnaseq
updated by BioinfGuru BioinfGuru • written by fluentin44 • fluentin44
0 votes
0 replies
812 views
Job: Open PhD position focusing on omics data integration and visualisation
topological_data_analysis data_visualization omics visual_analytics
written by jan.aerts • jan.aerts
0 votes
0 replies
723 views
News: ONLINE COURSE – Reproducible and collaborative data analysis with R (RACR03)
r reproducible data analysis
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
0 votes
4 replies
1.4K views
Identify and count gaps in sam/bam files
samtools
updated by Mark Mark • written by shpak.max • shpak.max
0 votes
0 replies
791 views
Passing list of genes to celltypist
de singlecell cellannotation celltypist python
written by Bioinformatics_begginner • Bioinformatics_begginner
0 votes
2 replies
1.4K views
Atac-seq shift single-end data
single-end atac-seq
updated by ATpoint ATpoint • written by sarahmanderni sarahmanderni
0 votes
2 replies
1.2K views
PROVEAN input for stop codon
variant provean
written by Vitis Vitis
0 votes
0 replies
748 views
Combining different studies from recount for differential gene expression analysis
combat-seq batch deseq2 recount
updated by ATpoint ATpoint • written by MieszkoL • MieszkoL
2 votes
14 replies
6.7K views
Forum: Good Bioinformatics Jokes/Puns?
bioinformatics
updated by zx8754 zx8754 • written by echolley • echolley
0 votes
0 replies
1.7K views
Job: Computational Biology PhD Position: Computational drug screening and synthetic lethality drug repurposing to identify novel therapeutic options for prostate cancer
python graphtheory prostate omics cancer
written by D4office • D4office
0 votes
0 replies
743 views
how to do screening of differentially expressed genes DEGs using network analyst tool?
networkanalyst tool degs
written by Nimra • Nimra
0 votes
2 replies
1.1K views
Statistical test or method to test relationship between nearby genes and CpG sites
r dna-methylation gene-expression
updated by Ram Ram • written by user911111111 • user911111111
0 votes
3 replies
2.1K views
Why does my Hi-C contact map show large regions making little to no contact?
bwa-mem2 hi-c pretextmap
updated by july_arinez • july_arinez • written by Winter • Winter
2 votes
2 replies
1.3K views
Merged analysis of microarray datasets using R
r meta-analysis microarray
updated by yura.grabovska • yura.grabovska • written by ruth • ruth
0 votes
0 replies
752 views
ATAC-seq +4 -5 shift in single-end setting before motif analysis
single-end atacseq
written by sarahmanderni sarahmanderni
0 votes
1 reply
752 views
best tools for bacterial wgMLST
wgmlst
updated by Mark Mark • written by blur blur
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