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0 votes
12 replies
3.3K views
Custom Genome Curation in IGV
igv
updated by rfran010 174 • | written by kerfuffle 2
0 votes
4 replies
2.3K views
Missing Output Exception Error in Snakemake with output directory
snakemake genome
updated by Ram 4.5K • | written by diop.awa94 0
0 votes
20 replies
5.4K views
How to produce a single joint-called VCF file using as input three WGS samples (VCF,CRAM,FASTQ)
vcf wgs
updated by Ram 4.5K • | written by shwivel 0
0 votes
2 replies
1.4K views
Is the 10X multiome chemistry most similar similar to 10XV1, 10XV2, or 10XV3?
snrnaseq kallisto 10x
written by biotrekker 11
1 vote
3 replies
2.0K views
Estimating per-variant heritability from summary stats
variants snp gwas
updated by LauferVA 497 • | written by Daniel 1
0 votes
5 replies
4.0K views
10X #3' RNA seq - How is strandedness determined?
scrna-seq
updated by Ram 4.5K • | written by Ashley 0
1 vote
2 replies
2.8K views
Mugsy alignment of 2 genomes
genome alignment
updated by skoplik 0 • | written by martha 1
0 votes
0 replies
587 views
Mugsy aligner kills alignment with "can't find species error"
aligner mugsy wga
updated by Ram 4.5K • | written by skoplik 0
0 votes
9 replies
2.5K views
Gene enrichment tools options
david shinygo gene-enrichment
updated by geneontologyhelp 57 • | written by Sahara 0
0 votes
3 replies
1.4K views
Help with heatmaps
deseq2 genecounts heatmap rnaseq
updated by LauferVA 497 • | written by rb_99 0
0 votes
1 reply
1.0K views
GATK CNV pipeline gcnvkernel import error
theano gcnvkernel gatk cnv hpc
written by Maverick 1
1 vote
3 replies
1.8K views
Does single-end short-read sequencing affect the mapping of mitochondrial and ribosomal RNA?
pair-end single-end rna-seq
updated by kalavattam 85 • | written by txema.heredia 31
0 votes
25 replies
6.3K views
How can I convert multiple bam files in a directory into fastq files using samtools bam2fq?
samtools bam fastq
written by Arthur 1
0 votes
0 replies
735 views
ddRADseq: GATK not matching STACKS refmap in terms of resolution?
polyploidy radseq variant-calling stacks gatk
updated by Ram 4.5K • | written by Valentin 0
0 votes
2 replies
1.2K views
How to Convert a tar file to a fastq file in Galaxy
galaxy
updated by Mensur Dlakic 3.0K • | written by rita 0
0 votes
2 replies
1.2K views
Help with cnet plot for customize pathway from MSigDb
cnet
written by Chris 36
0 votes
1 reply
757 views
MCScanx is giving an Empty Output
mcscanx
updated by Pierre Lindenbaum 17K • | written by agnes.barros88 0
1 vote
14 replies
3.2K views
FastQC GC-content, bimodal for maize?
rna-seq
written by boczniak767 89
0 votes
1 reply
926 views
RNA-seq, TMM and rRNA counts. Should rRNA genes be removed prior to DE analysis?
mtrna rna-seq rrna tmm
updated by Shred 163 • | written by gjuik 0
0 votes
8 replies
3.6K views
Out of Sequencer Nanopore Raw Data
fastq assembly fast5 genome nanopore
updated by GenoMax 16K • | written by SomeOne 33
0 votes
1 reply
843 views
KO number id to gene symbol
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updated by BioinfGuru 214 • | written by sooni 2
0 votes
16 replies
4.1K views
How to use NCBI annotation instead of Ensembl in analysing Transcriptome from RNAseq data
txdb ensembl ncbi rnaseq
written by Vojtěch 1
0 votes
2 replies
1.1K views
SNP or Variant Calling and Annotation with RNA-seq Reads
rna-seq variant alignment
updated by dthorbur 350 • | written by vireen105 0
0 votes
13 replies
2.8K views
Error with plotMDS in R
plotmds rstudio
written by egascon 6
0 votes
3 replies
843 views
Using samtools to determine Rh blood type
samtools
written by esiv 0
0 votes
1 reply
997 views
Comparison of the AA position of domains on cBioPortal and UniProt
uniprot cbioportal
written by larissa.kluxen 1
0 votes
1 reply
747 views
Changing the .gmt file output format
gmt
updated by Ram 4.5K • | written by Delicious_Puddin-chan 0
0 votes
2 replies
1.0K views
Genotype imputation check
imputation
updated by GenoMax 16K • | written by Sen 0
0 votes
14 replies
4.6K views
Reheadering a subsetted bam gives truncated file
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updated by kalavattam 85 • | written by Luciferine 0
0 votes
0 replies
746 views
News: Online course: Introduction to Nextflow
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updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
2 replies
1.5K views
Seurat v5 SCTransform warning messages (I consistently get 50 warnings)
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updated by fracarb8 176 • | written by michelle.swarovski 0
1 vote
11 replies
3.6K views
Basic guidance on Using 10x Genomics Data for De Novo Assembly
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updated by GenoMax 16K • | written by aleponce 0
0 votes
5 replies
1.6K views
samtools mpileup include soft-clipped bases
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written by noodle 65
1 vote
6 replies
21K views
Continuously add lines to ggplot with for loop
r ggplot2
updated by BioinfGuru 214 • | written by frcamacho 21
0 votes
4 replies
1.4K views
Why Are There Differences in RNA-seq Results?
igv rna-seq
written by ZZOYEA 2
0 votes
2 replies
925 views
Regions Overlap failure using bwa-mem2
bwa-mem2 conda
written by jsmith120f 0
0 votes
3 replies
3.4K views
DoubletFinder error
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updated by Ram 4.5K • | written by marco.barr 22
0 votes
1 reply
599 views
how to count polymorphic snps in vcf file
vcf
updated by Pierre Lindenbaum 17K • | written by 26bhagwat 0
0 votes
6 replies
2.5K views
Discrepancies in Sequence Length Distribution Between Trim Galore and Trimmomatic During Adapter Trimming
fastqc trimgalore multiqc trimmomatic
written by George 3
0 votes
1 reply
1.0K views
Discrepancies in F Coefficient and Heterozygosity Estimates
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updated by Ram 4.5K • | written by eleftosi 0
0 votes
11 replies
2.7K views
FASTQC: per base n content fail
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updated by GenoMax 16K • | written by Eddie 0
0 votes
3 replies
1.9K views
Changing font size in the key in heatmap.2
r heatmap heatmap.2
updated by Ram 4.5K • | written by Gerard 2
0 votes
0 replies
631 views
Mapping of gene names in GSVA
ensembl gsva hgnc
written by mrashad 9
0 votes
3 replies
795 views
Trycycler cluster crash
trycycler
updated by GenoMax 16K • | written by Daniele 0
5 votes
19 replies
79K views
Forum: Will A Masters In Bioinformatics Help Me In Getting A Job?
education career
updated by Ram 4.5K • | written by Bioinfo 5
1 vote
5 replies
51K views
How can I simply view the .vcf.gz file to get some basic information
snp genome
updated by venkat 1 • | written by nreid 1
0 votes
1 reply
1.4K views
Visualize in IGV mitochondrial variants found with MToolBox
igv mtoolbox mitochondria
updated by venkat 1 • | written by BIN 0
2 votes
11 replies
6.7K views
User friendly (visual&interactive) VCF/BCF mining tools (2021)
gui vcf
updated by venkat 1 • | written by William 540
0 votes
1 reply
826 views
SNPs with missing INFO tags from bcftools mpileup
bcftools mpileup
updated by iraun 627 • | written by malonzm1 2
1 vote
6 replies
2.0K views
Problem with gather() in R
gather r
written by egascon 6
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