4-way plot for comparing DEGs between 4 genotypes

Hello

I have sequencing data from mice of 4 genotypes, and i want to figure out a way to plot DEGs from gen1-vs-gen2 (x axis) and gen3-vs-gen4 (y axis) on a single plot. Do people have suggestions on how i can do this? I want this plot to replace a Venn diagram i currently have.

Thanks!

deg

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updated 2.1 years ago by dthorbur

• written 2.1 years ago by jaint1 •

1 answer

If I've understood correctly you can use an upset plot for that kind of comparison. Here is a link to an example using the R library UpSetR.

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written 2.1 years ago by dthorbur

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