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mk
mk
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1 month ago
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United States
Latest posts by user
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Comment: Comment: Is NeMO down for good?
written by mk mk
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1 reply
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Comment: Comment: Is NeMO down for good?
written by mk mk
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3 replies
116 views
Is NeMO down for good?
databases
updated by GenoMax GenoMax • written by mk mk
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1 reply
1.1K views
STARsolo sorted bam contains 'non-whitelisted' barcodes
starsolo alignment
updated by dsull dsull • written by mk mk
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1 reply
1.1K views
comparing STARsolo UMI-based directional deduplication vs umi-tools?
single-cell starsolo deduplication umi-tools
updated by i.sudbery i.sudbery • written by mk mk
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1 reply
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Comment: Comment: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
written by mk mk
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6 replies
3.3K views
Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
10x scrna-seq stranded
updated by dsull dsull • written by mk mk
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520 views
why STAR --clip[3p,5p]Nbases show up in the bam?
star clipping alignment
updated by LChart LChart • written by mk mk
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Comment: Comment: How to include the lane index in STARsolo count matrix barcodes.tsv?
written by mk mk
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Comment: Comment: How to include the lane index in STARsolo count matrix barcodes.tsv?
written by mk mk
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6 replies
1.9K views
How to include the lane index in STARsolo count matrix barcodes.tsv?
10x starsolo singlecell star alignment
updated by jared.andrews07 jared.andrews07 • written by mk mk
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2 replies
1.2K views
How to perform corrected Cell Barcode/UMI calling with an externally sorted BAM?
bam alignment starsolo star
updated by dsull dsull • written by mk mk
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1 reply
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Comment: Comment: Where does cellranger log its estimates for the input to DETECT_COUNT_CHEMISTRY?
written by mk mk
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3 replies
1.3K views
Where does cellranger log its estimates for the input to DETECT_COUNT_CHEMISTRY?
cellranger sequencing single-cell
updated by ATpoint ATpoint • written by mk mk
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Answer: Answer: how to get sequences by location when pyfaidx.Fasta(read_long_names=True) create
written by mk mk
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2 replies
1.9K views
how to get sequences by location when pyfaidx.Fasta(read_long_names=True) creates keys from FastaRecord (dmel r6 genome build)?
selene_sdk pyfaidx fasta python flybase
updated by Wayne Wayne • written by mk mk
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1.7K views
use GEOparse to download series supplemental files?
gse geoparse python geoquery geo
written by mk mk
2 votes
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Answer: Answer: use bioservices.UniProt (python) to map uniprot accession to [multiple] ensembl
written by mk mk
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2 replies
1.8K views
use bioservices.UniProt (python) to map uniprot accession to [multiple] ensembl ids
bioservices ensembl python uniprot
written by mk mk
2 votes
0 replies
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Answer: Answer: GeneActivity without Fragments file in Seurat for Integrating scRNA-seq and scAT
written by mk mk
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