I have a file containing the list of genome accession numbers (JADIXX000000000) , and I need to get the corresponding assembly accession numbers(GCA_016705575). Which database API should I use? Does anybody know the command that I can use for this purpose?
Using EntrezDirect
$ esearch -db assembly -query JADIXX000000000 | efetch -format docsum | xtract -pattern DocumentSummary -element Genbank
GCA_016705575.1
Thank you very much, it works well. Then i will try to use a script to conduct the transition
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