lncRNA-miRNA interaction
I want to predict lncRNA-miRNA interaction, so can I use TargetScan which is usually used for predicting mRNA-miRNA interaction, and can I consider full length of lncRNA sequence as input? Or are there other tools to predict lncRNA-miRNA interaction?
• 1,002 views
•
link
updated
by
onco-research •
•
written
by
ziyan •
•
written
by
ziyan •
1 answer
The R package GDCRNAtools which you can find in the bioconductor has advanced function when compared to TargetScan please check it "https://www.bioconductor.org/packages/release/bioc/html/GDCRNATools.html"
• 0 views
•
link
written
by
onco-research •
Log in to answer this question.
More posts like this
-
miRNA-lncRNA interaction prediction
written by Francesco •
-
RNA interaction network analysis
written by Archit •
-
microrna mRNA interactions search
written by cagdas •
-
predict miRNA-lncRNA interaction based on lncRNA sequence
written by robinycfang •
-
Are there prediction tools that predict tageting miRNAs based on genome sequence (fasta)?
written by jumper •
-
lncRNA-RNA interaction tool
written by BioBaby •
-
Selecting TargetScan datatype
written by landscape95
-
Selecting TargetScan datatype
written by landscape95
-
miRNA binding prediction of SNPs
written by Nick •
-
Can ncRNAs be found from all RNA-seq data?
written by fernardo
