QUALITY SCORE OF human vcf file genearted through GATK
Hi everyone,
I have a VCF file of a human sample. However, when I examined the file, I noticed that the quality score goes up to 10000 and the depth is above 500. Is this normal for human samples, or could it indicate pipeline errors? I haven't seen these types of values before when I worked with plant genomes. Your suggestions would be greatly appreciated.
Thank you.
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ashaneev07 •
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It would be greatly appreciated if some could provide suggestions. Thank you