Clusterprofiler with M. tuberculosis genome
Hi everyone, I'm trying to perform GO and KEGG pathway enrichment using cluster profiler with R studio on the M. tuberculosis genome but I'm struggling in finding the reference genome for the analysis. Can anyone help me?
Thank you very much
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Maurice •
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You can try using the Gene Ontology database here https://geneontology.org/
They have the M. tuberculosis reference database. You can upload your custom genesets here and fine-tune the reference database you need.